Host cell factors in HIV replication: meta-analysis of genome-wide studies (Q33455551)

26 July 2017

8 references

20 June 2019

3 November 2019

27 July 2020

15 September 2020

5 November 2020

30 April 2021

22 August 2022

10 January 2024

0 references

Host cell factors in HIV replication: meta-analysis of genome-wide studies (English)

1 reference

host microbial interaction

26 July 2017

0 references

1 reference

3 November 2019

1 reference

3 November 2019

1 reference

27 July 2020

viral genome replication

2 references

15 September 2020

5 November 2020

1 reference

30 April 2021

Gerard Cagney

5

0 references

Frederic D. Bushman

object named as

Frederic D Bushman

1

0 references

Trey Ideker

12

object named as

Trey Ideker

1 reference

26 July 2017

14

Nevan J Krogan

1 reference

26 July 2017

10

Renate König

1 reference

26 July 2017

Nirav Malani

2

1 reference

26 July 2017

Jason Fernandes

3

1 reference

26 July 2017

Iván D'Orso

4

1 reference

26 July 2017

Tracy L Diamond

6

1 reference

26 July 2017

Honglin Zhou

7

1 reference

26 July 2017

Daria J Hazuda

8

1 reference

26 July 2017

Amy S Espeseth

9

1 reference

26 July 2017

Sourav Bandyopadhyay

11

1 reference

26 July 2017

Stephen P Goff

13

1 reference

26 July 2017

Alan D Frankel

15

1 reference

26 July 2017

John A T Young

16

1 reference

26 July 2017

Sumit K Chanda

17

1 reference

26 July 2017

29 May 2009

1 reference

26 July 2017

1 May 2009

8 references

20 June 2019

3 November 2019

27 July 2020

15 September 2020

5 November 2020

30 April 2021

22 August 2022

10 January 2024

9 references

26 July 2017

20 June 2019

3 November 2019

27 July 2020

15 September 2020

5 November 2020

30 April 2021

22 August 2022

10 January 2024

5

1 reference

26 July 2017

e1000437

1 reference

26 July 2017

5

1 reference

Creative Commons Attribution 4.0 International

26 July 2017

8 references

20 June 2019

3 November 2019

27 July 2020

15 September 2020

5 November 2020

30 April 2021

22 August 2022

describes a project that uses

10 January 2024

copyright status

copyrighted

0 references

Cytoscape

object named as

cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Human immunodeficiency virus type 1, human protein interaction database at NCBI.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Baseline resistance of primary human immunodeficiency virus type 1 strains to the CXCR4 inhibitor AMD3100.

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Drosophila RNAi screen identifies host genes important for influenza virus replication

28 July 2018

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Central role of reverting mutations in HLA associations with human immunodeficiency virus set point

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Host proteins interacting with the Moloney murine leukemia virus integrase: multiple transcriptional regulators and chromatin binding factors

28 July 2018

1 reference

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Akt inhibitors as an HIV-1 infected macrophage-specific anti-viral therapy

28 July 2018

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Identification of host proteins required for HIV infection through a functional genomic screen

28 July 2018

1 reference

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Role of PSIP1/LEDGF/p75 in lentiviral infectivity and integration targeting

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

The molecular basis of eukaryotic transcription

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

LEDGF/p75 functions downstream from preintegration complex formation to effect gene-specific HIV-1 integration

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

LEDGF/p75 interacts with divergent lentiviral integrases and modulates their enzymatic activity in vitro

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

High-content screening of functional genomic libraries

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Modulating target site selection during human immunodeficiency virus DNA integration in vitro with an engineered tethering factor

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Proteomic and biochemical analysis of purified human immunodeficiency virus type 1 produced from infected monocyte-derived macrophages

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Association of RNA helicase a with human immunodeficiency virus type 1 particles

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

A role for LEDGF/p75 in targeting HIV DNA integration

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

DBR1 siRNA inhibition of HIV-1 replication

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

The functionally conserved nucleoporins Nup124p from fission yeast and the human Nup153 mediate nuclear import and activity of the Tf1 retrotransposon and HIV-1 Vpr.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

The promise of genomics to identify novel therapeutic targets

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Requirement of DDX3 DEAD box RNA helicase for HIV-1 Rev-RRE export function

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Human cell proteins and human immunodeficiency virus DNA integration

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

LEDGF/p75 determines cellular trafficking of diverse lentiviral but not murine oncoretroviral integrase proteins and is a component of functional lentiviral preintegration complexes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Association of the Mediator complex with enhancers of active genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

The Protein Network of HIV Budding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

LEDGF/p75 is essential for nuclear and chromosomal targeting of HIV-1 integrase in human cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

DAVID: Database for Annotation, Visualization, and Integrated Discovery

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

An automated method for finding molecular complexes in large protein interaction networks

28 July 2018

1 reference

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Visualization of the intracellular behavior of HIV in living cells

28 July 2018

1 reference

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HIV-1 integrase forms stable tetramers and associates with LEDGF/p75 protein in human cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

28 July 2018

1 reference

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HIV-1 integration in the human genome favors active genes and local hotspots

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Positive and negative modulation of human immunodeficiency virus type 1 Rev function by cis and trans regulators of viral RNA splicing

28 July 2018

1 reference

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RNAi: nature abhors a double-strand

28 July 2018

1 reference

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Tsg101 and the vacuolar protein sorting pathway are essential for HIV-1 budding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

A role for RNA helicase A in post-transcriptional regulation of HIV type 1

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Nucleoporins nup98 and nup214 participate in nuclear export of human immunodeficiency virus type 1 Rev

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Isolation of cDNAs encoding novel transcription coactivators p52 and p75 reveals an alternate regulatory mechanism of transcriptional activation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Antiviral activity of the proteasome on incoming human immunodeficiency virus type 1.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

The importin-beta family member Crm1p bridges the interaction between Rev and the nuclear pore complex during nuclear export

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Bicyclams, a class of potent anti-HIV agents, are targeted at the HIV coreceptor fusin/CXCR-4.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Crystal structure of human cyclophilin A bound to the amino-terminal domain of HIV-1 capsid

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Folding, interaction with GRP78-BiP, assembly, and transport of the human immunodeficiency virus type 1 envelope protein

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Knockdown screens to knockout HIV-1.

28 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000437

A probability-based approach for the analysis of large-scale RNAi screens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000437

A whole-genome association study of major determinants for host control of HIV-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000437

RNA interference screen for human genes associated with West Nile virus infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000437

An essential role for LEDGF/p75 in HIV integration

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000437

Gastrointestinal disease in simian immunodeficiency virus-infected rhesus macaques is characterized by proinflammatory dysregulation of the interleukin-6-Janus kinase/signal transducer and activator of transcription3 pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000437

Transcription start regions in the human genome are favored targets for MLV integration

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000437

HIV-1 Infection: Going Nuclear with TNPO3/Transportin-SR2 and Integrase

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000437

Transportin-SR2 imports HIV into the nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000437

Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Human immunodeficiency virus cDNA metabolism: notable stability of two-long terminal repeat circles

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682202

Genome-scale RNAi screen for host factors required for HIV replication

31 October 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/19478882

12 December 2020

inferred from PubMed ID database lookup

Roles of host cell factors in circularization of retroviral dna

1 reference

https://pubmed.ncbi.nlm.nih.gov/19478882

12 December 2020

inferred from PubMed ID database lookup

Apolipoprotein A-I increases association of cytosolic cholesterol and caveolin-1 with microtubule cytoskeletons in rat astrocytes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19478882

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PPAT.1000437

1 reference

26 July 2017

1 reference

26 July 2017

1 reference