Splicing in the eukaryotic ancestor: form, function and dysfunction (Q33478140)

27 July 2017

Splicing in the eukaryotic ancestor: form, function and dysfunction (English)

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27 July 2017

2

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27 July 2017

Scott William Roy

1

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27 July 2017

1 July 2009

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Trends in Ecology & Evolution

27 July 2017

9

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based on heuristic

inferred from page(s)

published in

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27 July 2017

24

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27 July 2017

8

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27 July 2017

447-455

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The ins and outs of group II introns

27 July 2017

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

The natural history of group I introns

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Vertical evolution and intragenic spread of lichen-fungal group I introns.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Group II introns: structure, folding and splicing mechanism

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Initial sequencing and analysis of the human genome

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

The spliceosome: the most complex macromolecular machine in the cell?

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

The generality of self-splicing RNA: relationship to nuclear mRNA splicing

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

On the origin of RNA splicing and introns

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Selfish DNA and the origin of introns

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

An early evolutionary origin for the minor spliceosome

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Intron size, abundance, and distribution within untranslated regions of genes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Effect of 5'UTR introns on gene expression in Arabidopsis thaliana.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Evolutionary conservation of UTR intron boundaries in Cryptococcus.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Posttranscriptional gene regulation by spatial rearrangement of the 3' untranslated region

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Conserved sequences in a class of rare eukaryotic nuclear introns with non-consensus splice sites

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Evolutionary fates and origins of U12-type introns.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Multiple splicing signals control alternative intron retention of bovine growth hormone pre-mRNA

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Transgene analysis proves mRNA trans-splicing at the complex mod(mdg4) locus in Drosophila.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Operons in C. elegans: polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

7 January 2021

Intron-rich ancestors

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

The biology of intron gain and loss.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

A spliceosomal intron in Giardia lamblia

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

The miniaturized nuclear genome of eukaryotic endosymbiont contains genes that overlap, genes that are cotranscribed, and the smallest known spliceosomal introns

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Coevolution of genomic intron number and splice sites

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Characterization of the unique intron-exon junctions of Euglena gene(s) encoding the polyprotein precursor to the light-harvesting chlorophyll a/b binding protein of photosystem II.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Spliceosomal cleavage generates the 3' end of telomerase RNA.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Extremely intron-rich genes in the alveolate ancestors inferred with a flexible maximum-likelihood approach

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Large-scale comparison of intron positions among animal, plant, and fungal genes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Malin: maximum likelihood analysis of intron evolution in eukaryotes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

New maximum likelihood estimators for eukaryotic intron evolution

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

The chaperonin genes of jakobid and jakobid-like flagellates: implications for eukaryotic evolution.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

How did alternative splicing evolve?

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

A computational analysis of sequence features involved in recognition of short introns

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Finding exonic islands in a sea of non-coding sequence: splicing related constraints on protein composition and evolution are common in intron-rich genomes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Comparative and functional anatomy of group II catalytic introns--a review

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

U12DB: a database of orthologous U12-type spliceosomal introns

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Primordial spliceosomal introns were probably U2-type

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Frequent alternative splicing of human genes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Gene structure prediction and alternative splicing analysis using genomically aligned ESTs

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Alternative isoform regulation in human tissue transcriptomes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Database and analyses of known alternatively spliced genes in plants

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Genomewide comparative analysis of alternative splicing in plants

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Different levels of alternative splicing among eukaryotes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Cross-kingdom patterns of alternative splicing and splice recognition

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Widespread Evolutionary Conservation of Alternatively Spliced Exons in Caenorhabditis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Identification and analysis of alternative splicing events conserved in human and mouse

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Alternative splicing of conserved exons is frequently species-specific in human and mouse

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Origin of introns by ‘intronization’ of exonic sequences

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Translational control of intron splicing in eukaryotes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Tracking the evolution of alternatively spliced exons within the Dscam family

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Intron mis-splicing: no alternative?

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Complex spliceosomal organization ancestral to extant eukaryotes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

The control of alternative splicing at genes regulating sexual differentiation in D. melanogaster

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Sex in flies: the splice of life

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Rapid, transcript-specific changes in splicing in response to environmental stress

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

A faux 3'-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Incomplete nonsense-mediated mRNA decay in Giardia lamblia

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Alternative pre-mRNA splicing in Drosophila spliceosomal assembly factor RNP-4F during development

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Retained introns increase putative microRNA targets within 3' UTRs of human mRNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

On the origin and functions of RNA-mediated silencing: from protists to man

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Trans-splicing and polycistronic transcription in Caenorhabditis elegans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Trans-spliced leader addition to mRNAs in a cnidarian

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

mRNA 5'-leader trans-splicing in the chordates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Spliced leader RNA-mediated trans-splicing in a dinoflagellate, Karenia brevis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

SL trans-splicing: easy come or easy go?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

7 January 2021

Operons in eukaryotes

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

New components of the spliced leader RNP required for nematode trans-splicing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Evolutionary dynamics of nematode operons: easy come, slow go.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Operon conservation and the evolution of trans-splicing in the phylum Nematoda

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Exportin 1 mediates nuclear export of the kinetoplastid spliced leader RNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

A two-step mechanism for 5' and 3' splice-site pairing

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Enhancer-dependent interaction between 5' and 3' splice sites in trans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

Spliceosomal introns as tools for genomic and evolutionary analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

How do eucaryotic ribosomes select initiation regions in messenger RNA?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2009.04.005

10.1016/J.TREE.2009.04.005

7 January 2021

Identifiers

DOI

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27 July 2017

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PubMed ID

19576657