The protist Trichomonas vaginalis harbors multiple lineages of transcriptionally active Mutator-like elements (Q33484982)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19622157%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

title

The protist Trichomonas vaginalis harbors multiple lineages of transcriptionally active Mutator-like elements (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19622157%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

main subject

Trichomonas vaginalis

0 references

1 reference

Fabrício R Lopes

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19622157%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Joana C Silva

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19622157%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Gustavo G L Costa

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19622157%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Gonçalo A G Pereira

series ordinal

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19622157%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

language of work or name

English

0 references

publication date

21 July 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19622157%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19622157%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19622157%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

page(s)

330

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19622157%20AND%20SRC:MED&resulttype=core&format=json

Helitrons on a roll: eukaryotic rolling-circle transposons

2 February 2020

cites work

1 reference

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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

21 June 2018

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Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis

21 June 2018

1 reference

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CDD: a conserved domain database for interactive domain family analysis

21 June 2018

1 reference

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Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses

21 June 2018

1 reference

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Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes

21 June 2018

1 reference

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MEME: discovering and analyzing DNA and protein sequence motifs

21 June 2018

1 reference

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Do transposable elements really contribute to proteomes?

21 June 2018

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21 June 2018

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Human endogenous retroviruses in the primate lineage and their influence on host genomes

21 June 2018

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Why repetitive DNA is essential to genome function

21 June 2018

1 reference

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Mutator-like element in the yeast Yarrowia lipolytica displays multiple alternative splicings

21 June 2018

1 reference

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A potentially functional mariner transposable element in the protist Trichomonas vaginalis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Molecular phylogeny of Trichomonadidae family inferred from ITS-1, 5.8S rRNA and ITS-2 sequences.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

WebLogo: A Sequence Logo Generator

21 June 2018

1 reference

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Factors that affect the horizontal transfer of transposable elements.

21 June 2018

1 reference

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Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions

21 June 2018

1 reference

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ROLES OF DEOXYRIBONUCLEIC ACID IN INHERITANCE.

21 June 2018

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MrBayes 3: Bayesian phylogenetic inference under mixed models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Hop, an active Mutator-like element in the genome of the fungus Fusarium oxysporum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Molecular biology of the amitochondriate parasites, Giardia intestinalis, Entamoeba histolytica and Trichomonas vaginalis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Genomic DNA insertions and deletions occur frequently between humans and nonhuman primates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Origin of a substantial fraction of human regulatory sequences from transposable elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

21 June 2018

1 reference

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The Bioperl toolkit: Perl modules for the life sciences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Transposable elements and the evolution of genome size in eukaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

A two-hybrid screening of human Tau protein: interactions with Alu-derived domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma

21 June 2018

1 reference

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Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

The MuDR transposon terminal inverted repeat contains a complex plant promoter directing distinct somatic and germinal programs

21 June 2018

1 reference

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Mutator-like elements in Arabidopsis thaliana. Structure, diversity and evolution

21 June 2018

1 reference

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Reading between the LINEs: human genomic variation induced by LINE-1 retrotransposition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

21 June 2018

1 reference

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Transposon diversity in Arabidopsis thaliana

21 June 2018

1 reference

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Transposons and genome evolution in plants

21 June 2018

1 reference

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The late developmental pattern of Mu transposon excision is conferred by a cauliflower mosaic virus 35S -driven MURA cDNA in transgenic maize

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Alu repeats and human disease

21 June 2018

1 reference

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BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

21 June 2018

1 reference

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Functional analysis of deletion derivatives of the maize transposon MuDR delineates roles for the MURA and MURB proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Rapid amplification of a retrotransposon subfamily is evolving the mouse genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

The paleontology of intergene retrotransposons of maize

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Characterization of the maize Mutator transposable element MURA transposase as a DNA-binding protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Transposable elements as sources of variation in animals and plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Two forms of human double-stranded RNA-specific editase 1 (hRED1) generated by the insertion of an Alu cassette.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Tissue-specific accumulation of MURB, a protein encoded by MuDR, the autonomous regulator of the Mutator transposable element family

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Genetic characterization of the Mutator system in maize: behavior and regulation of Mu transposons in a minimal line

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Characterization of the major transcripts encoded by the regulatory MuDR transposable element of maize

21 June 2018

1 reference

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Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics

21 June 2018

1 reference

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Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Mutator activity in maize correlates with the presence and expression of the Mu transposable element Mu9

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Identification of a regulatory transposon that controls the Mutator transposable element system in maize

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA"

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Unexpected diversity and differential success of DNA transposons in four species of entamoeba protozoans.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Pack-MULE transposable elements mediate gene evolution in plants

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Comparative analysis of Mutator -like transposases in sugarcane.

31 October 2018

1 reference

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The establishment of various trichomonads of animals and man in axenic cultures

31 October 2018

1 reference

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Worldwide distribution of transposable element copy number in natural populations of Drosophila simulans

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Molecular characterization of the recent intragenomic spread of the murine endogenous retrovirus MuERV-L.

31 October 2018

1 reference

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Mechanisms and rates of genome expansion and contraction in flowering plants.

31 October 2018

1 reference

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Translated Alu sequence determines nuclear localization of a novel catalytic subunit of casein kinase 2.

31 October 2018

1 reference

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Evolution of genome size in Drosophila. is the invader's genome being invaded by transposable elements?

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Mutator transposase is widespread in the grasses

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Molecular domestication--more than a sporadic episode in evolution.

31 October 2018

1 reference

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Transposable elements and genome evolution: the case of Drosophila simulans.

31 October 2018

1 reference

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Parabasalian flagellates are ancient eukaryotes

31 October 2018

1 reference

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Wake up of transposable elements following Drosophila simulans worldwide colonization.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Tempo and mode of Ty element evolution in Saccharomyces cerevisiae.

31 October 2018

1 reference

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MudrA-like sequences from rice and sugarcane cluster as two bona fide transposon clades and two domesticated transposases

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725143

Survey of transposable elements from rice genomic sequences

31 October 2018

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12 December 2020

Transposable elements are found in a large number of human protein-coding genes

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12 December 2020

Transposable elements in Coffea (Gentianales: Rubiacea) transcripts and their role in the origin of protein diversity in flowering plants

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12 December 2020

Revisiting horizontal transfer of transposable elements in Drosophila

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12 December 2020

Transposable elements as a significant source of transcription regulating signals

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12 December 2020

Identifiers

DOI

10.1186/1471-2164-10-330

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19622157%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

2 February 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-10-330

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19622157%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

PubMed publication ID

19622157

1 reference