MOODS: fast search for position weight matrix matches in DNA sequences (Q33505917)

27 July 2017

MOODS: fast search for position weight matrix matches in DNA sequences (English)

1 reference

27 July 2017

Esko Ukkonen

5

0 references

author name string

Janne Korhonen

1

1 reference

27 July 2017

Petri Martinmäki

2

1 reference

27 July 2017

Cinzia Pizzi

3

1 reference

27 July 2017

Pasi Rastas

4

1 reference

27 July 2017

language of work or name

English

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publication date

22 September 2009

1 reference

27 July 2017

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27 July 2017

25

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27 July 2017

23

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27 July 2017

3181-3182

1 reference

Biopython: freely available Python tools for computational molecular biology and bioinformatics

27 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778336

Fast index based algorithms and software for matching position specific scoring matrices

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778336

Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778336

TRANSFAC: transcriptional regulation, from patterns to profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778336

TFBS: Computational framework for transcription factor binding site analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778336

Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778336

Methods for calculating the probabilities of finding patterns in sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778336

Finding significant matches of position weight matrices in linear time

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778336

Fast probabilistic analysis of sequence function using scoring matrices

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19773334

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTP554

1 reference

journals/bioinformatics/KorhonenMPRU09

27 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

27 July 2017

1 reference