Population genetic analysis infers migration pathways of Phytophthora ramorum in US nurseries (Q33506080)

27 July 2017

title

Population genetic analysis infers migration pathways of Phytophthora ramorum in US nurseries (English)

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27 July 2017

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5

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27 July 2017

Erica M Goss

1

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27 July 2017

Meg Larsen

series ordinal

2

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27 July 2017

Gary A Chastagner

series ordinal

3

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27 July 2017

Donald R Givens

series ordinal

4

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27 July 2017

publication date

18 September 2009

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27 July 2017

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27 July 2017

volume

5

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27 July 2017

issue

9

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27 July 2017

page(s)

e1000583

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Creative Commons CC0 License

27 July 2017

copyright license

start time

18 September 2009

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April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

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cites work

Arlequin (version 3.0): an integrated software package for population genetics data analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Phytophthora ramorum: a pathogen with a remarkably wide host range causing sudden oak death on oaks and ramorum blight on woody ornamentals.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Analysis of genotypic diversity data for populations of microorganisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Inference of population structure using multilocus genotype data: dominant markers and null alleles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Estimation of the population scaled mutation rate from microsatellite data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Genotypic diversity: estimation and prediction in samples.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Molecular epidemiology: HIV-1 and HCV sequences from Libyan outbreak

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Survey and analysis of microsatellites from transcript sequences in Phytophthora species: frequency, distribution, and potential as markers for the genus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Plant pathogen forensics: capabilities, needs, and recommendations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Phytophthora ramorum: integrative research and management of an emerging pathogen in California and Oregon forests

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Toward a system of microbial forensics: from sample collection to interpretation of evidence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

A simple method for the calculation of microsatellite genotype distances irrespective of ploidy level

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Effect of unsampled populations on the estimation of population sizes and migration rates between sampled populations.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

The deep roots of eukaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Molecular evidence of HIV-1 transmission in a criminal case

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

High frequency mitotic gene conversion in genetic hybrids of the oomycete Phytophthora sojae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Molecular investigation of the Aum Shinrikyo anthrax release in Kameido, Japan

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Inference of population structure using multilocus genotype data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Panglobal distribution of a single clonal lineage of the Irish potato famine fungus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Reconstruction of the Sudden Oak Death epidemic in California through microsatellite analysis of the pathogen Phytophthora ramorum.

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000583

Population dynamics of the sudden oak death pathogen Phytophthora ramorum in Oregon from 2001 to 2004.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000583

Genomics and microbiology. Microbial forensics--"cross-examining pathogens".

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000583

Microsatellite markers identify three lineages of Phytophthora ramorum in US nurseries, yet single lineages in US forest and European nursery populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000583

Migration patterns of the emerging plant pathogen Phytophthora ramorum on the West Coast of the United States of America

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000583

Mitochondrial haplotype determination in the oomycete plant pathogen Phytophthora ramorum

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000583

Ancient isolation and independent evolution of the three clonal lineages of the exotic sudden oak death pathogen Phytophthora ramorum

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000583

Standardizing the nomenclature for clonal lineages of the sudden oak death pathogen, Phytophthora ramorum

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000583

Differentiation of European and North American genotypes ofPhytophthora ramorumby real-time polymerase chain reaction primer extension

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000583

genotype and genodive: two programs for the analysis of genetic diversity of asexual organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000583

Characterisation of European and North American Phytophthora ramorum isolates due to their morphology and mating behaviour in vitro with heterothallic Phytophthora species.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

AFLP and phylogenetic analyses of North American and European populations of Phytophthora ramorum.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736564

Rapid changes in genetic structure of epidemic populations of Ophiostoma ulmi

31 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1000583

Genetic Variation Among Vegetative Compatibility Groups of Fusarium oxysporum f. sp. cubense Analyzed by DNA Fingerprinting

21 January 2018

1 reference

12 December 2020

Three Clonal Lineages of Phytophthora cinnamomi in Australia Revealed by Microsatellites

1 reference

12 December 2020

The population genetics of phytophthora

1 reference

12 December 2020

Population Structure of Dogwood Anthracnose Fungus

1 reference

12 December 2020

10.1371/JOURNAL.PPAT.1000583

Identifiers

DOI

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27 July 2017

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27 July 2017

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