Integrative analysis of gene expression and copy number alterations using canonical correlation analysis (Q33557657)

28 July 2017

title

Integrative analysis of gene expression and copy number alterations using canonical correlation analysis (English)

1 reference

canonical correlation analysis

28 July 2017

main subject

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4

Magnus Fontes

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Henrik Lilljebjörn

object named as

Henrik Lilljebjörn

2

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Charlotte Soneson

object named as

Charlotte Soneson

1

0 references

Thoas Fioretos

object named as

Thoas Fioretos

3

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author name string

Magnus Fontes

4

1 reference

28 July 2017

publication date

15 April 2010

1 reference

28 July 2017

1 reference

28 July 2017

volume

11

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28 July 2017

page(s)

191

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Creative Commons Attribution 2.0 Generic

28 July 2017

copyright license

start time

15 April 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Regularized Multivariate Regression for Identifying Master Predictors with Application to Integrative Genomics Study of Breast Cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

High hyperdiploid childhood acute lymphoblastic leukemia

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Sparse canonical correlation analysis with application to genomic data integration

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Sparse canonical methods for biological data integration: application to a cross-platform study.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

A sparse PLS for variable selection when integrating omics data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Integration of genomic and gene expression data of childhood ALL without known aberrations identifies subgroups with specific genetic hallmarks

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

CGH microarrays and cancer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

The impact of translocations and gene fusions on cancer causation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Relative impact of nucleotide and copy number variation on gene expression phenotypes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Epigenetic gene silencing in cancer – a mechanism for early oncogenic pathway addiction?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Molecular signatures in childhood acute leukemia and their correlations to expression patterns in normal hematopoietic subpopulations.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Canonical correlation analysis: an overview with application to learning methods

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Bioconductor: open software development for computational biology and bioinformatics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Quantifying the association between gene expressions and DNA-markers by penalized canonical correlation analysis.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Classification of pediatric acute lymphoblastic leukemia by gene expression profiling

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Impact of DNA amplification on gene expression patterns in breast cancer

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873536

Silence of chromosomal amplifications in colon cancer

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20398334

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genomic gains and losses influence expression levels of genes located within the affected regions: a study on acute myeloid leukemias with trisomy 8, 11, or 13, monosomy 7, or deletion 5q

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20398334

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Integration of global SNP-based mapping and expression arrays reveals key regions, mechanisms, and genes important in the pathogenesis of multiple myeloma

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20398334

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

ADE-4: a multivariate analysis and graphical display software

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1023/A:1018513530268

Identifiers

DOI

10.1186/1471-2105-11-191

1 reference

journals/bmcbi/SonesonLFF10

28 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

28 July 2017

1 reference