Function-based identification of mammalian enhancers using site-specific integration (Q33559746)

28 July 2017

Function-based identification of mammalian enhancers using site-specific integration (English)

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28 July 2017

Diane E Dickel

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Alex S Nord

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Alex S Nord

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Axel Visel

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Axel Visel

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Berthold Gottgens

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Berthold Göttgens

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28 July 2017

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Len A Pennacchio

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28 July 2017

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Ingrid Plajzer-Frick

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28 July 2017

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Jennifer A Akiyama

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28 July 2017

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Veena Afzal

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28 July 2017

Yiwen Zhu

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28 July 2017

John N Wylie

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28 July 2017

Aileen Kirkpatrick

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28 July 2017

Benoit G Bruneau

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28 July 2017

23 March 2014

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28 July 2017

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28 July 2017

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28 July 2017

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28 July 2017

566-571

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https://scigraph.springernature.com/pub.10.1038/nmeth.2886

28 July 2017

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cites work

Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Fine tuning of craniofacial morphology by distant-acting enhancers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

RNA-programmed genome editing in human cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Genome-wide quantitative enhancer activity maps identified by STARR-seq

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

RNA-guided human genome engineering via Cas9

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Multiplex genome engineering using CRISPR/Cas systems

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Latent regulatory potential of human-specific repetitive elements

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Complex effects of nucleotide variants in a mammalian cis-regulatory element.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

An integrated encyclopedia of DNA elements in the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Cis-regulatory control of corticospinal system development and evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Stage-specific optimization of activin/nodal and BMP signaling promotes cardiac differentiation of mouse and human pluripotent stem cell lines

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

A map of human genome variation from population-scale sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Genomic views of distant-acting enhancers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Histone modifications at human enhancers reflect global cell-type-specific gene expression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

ChIP-seq accurately predicts tissue-specific activity of enhancers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

An intrinsic mechanism of corticogenesis from embryonic stem cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Long-range gene control and genetic disease

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

In vivo enhancer analysis of human conserved non-coding sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Nanog binds to Smad1 and blocks bone morphogenetic protein-induced differentiation of embryonic stem cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

A 5.5-kb enhancer is both necessary and sufficient for regulation of Wnt-1 transcription in vivo.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Single-copy transgenic mice with chosen-site integration

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Expression of a β-globin gene is enhanced by remote SV40 DNA sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

An erythroid-specific, developmental-stage-independent enhancer far upstream of the human "beta-like globin" genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Inducible expression of an hsp68-lacZ hybrid gene in transgenic mice

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

DNaseI hypersensitive sites 1, 2 and 3 of the human beta-globin dominant control region direct position-independent expression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

Structure and function of the murine beta-globin locus control region 5' HS-3

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008384

A map of the cis-regulatory sequences in the mouse genome

28 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2886

Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2886

Targeted deletion of a branchial arch-specific enhancer reveals a role of dHAND in craniofacial development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2886

Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2886

Massively parallel functional dissection of mammalian enhancers in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2886

Vascular bed-specific regulation of the von Willebrand factor promoter in the heart and skeletal muscle.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2886

Mapping and analysis of chromatin state dynamics in nine human cell types

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2886

Ultraconservation identifies a small subset of extremely constrained developmental enhancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2886

Functional cis-regulatory genomics for systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2886

Gene trapping methods for the identification and functional analysis of cell surface proteins in mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2886

Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2886

Generation of cortical neurons from mouse embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2886

21 January 2018

Identifiers

DOI

10.1038/NMETH.2886

1 reference

Dimensions Publication ID

28 July 2017

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1 reference

28 July 2017

1 reference