BISMA--fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences (Q33575027)

28 July 2017

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title

BISMA--fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences (English)

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28 July 2017

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4

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28 July 2017

Richard Reinhardt

3

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Yingying Zhang

series ordinal

2

object named as

Yingying Zhang

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28 July 2017

Christian Rohde

1

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28 July 2017

6 May 2010

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28 July 2017

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28 July 2017

11

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28 July 2017

230

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https://scigraph.springernature.com/pub.10.1186/1471-2105-11-230

28 July 2017

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Non-imprinted allele-specific DNA methylation on human autosomes.

14 July 2018

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New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

Human DNA methylomes at base resolution show widespread epigenomic differences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution

14 July 2018

1 reference

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Kismeth: analyzer of plant methylation states through bisulfite sequencing

14 July 2018

1 reference

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QUMA: quantification tool for methylation analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

Bisulfite sequencing Data Presentation and Compilation (BDPC) web server--a useful tool for DNA methylation analysis.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

Clustal W and Clustal X version 2.0

14 July 2018

1 reference

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LINE-1 hypomethylation in cancer is highly variable and inversely correlated with microsatellite instability

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

Chromatin modifications and their function

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

14 July 2018

The mammalian epigenome

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Genomic DNA methylation: the mark and its mediators

14 July 2018

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BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

Biochemistry and biology of mammalian DNA methyltransferases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

The epigenetics of cancer etiology

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

Epigenetics in human disease and prospects for epigenetic therapy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

DNA methylation in the Alu sequences of diploid and haploid primary human cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

Developmental differences in methylation of human Alu repeats

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

High sensitivity mapping of methylated cytosines

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

CyMATE: a new tool for methylation analysis of plant genomic DNA after bisulphite sequencing.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

One Argonaute family member, Eif2c2 (Ago2), is essential for development and appears not to be involved in DNA methylation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

De novo DNA methylation is dispensable for the initiation and propagation of X chromosome inactivation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

Bisulfite genomic sequencing-derived methylation profile of the xist gene throughout early mouse development.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877691

31 October 2018

Identifiers

DOI

10.1186/1471-2105-11-230

1 reference

journals/bmcbi/RohdeZRJ10

28 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

28 July 2017

1 reference

PubMed ID

20459626