Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition (Q33590986)

28 July 2017

Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition (English)

1 reference

28 July 2017

3

Yu-Dong Cai

1 reference

28 July 2017

Lei Chen

1

0 references

Kuo-Chen Chou

series ordinal

4

object named as

Kuo-Chen Chou

1 reference

28 July 2017

Kai-Yan Feng

2

1 reference

PubMed ID

20513238

28 July 2017

Hai-Peng Li

series ordinal

5

1 reference

PubMed ID

20513238

28 July 2017

language of work or name

1 reference

31 May 2010

1 reference

28 July 2017

1 reference

28 July 2017

11

1 reference

28 July 2017

293

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-11-293

28 July 2017

0 references

cites work

Graphic rule for drug metabolism systems

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A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0

21 June 2018

1 reference

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Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function

21 June 2018

1 reference

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Designing inhibitors of M2 proton channel against H1N1 swine influenza virus

21 June 2018

1 reference

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QuatIdent: a web server for identifying protein quaternary structural attribute by fusing functional domain and sequential evolution information

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine

21 June 2018

1 reference

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InterPro: the integrative protein signature database

21 June 2018

1 reference

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Prediction of peptidase category based on functional domain composition

21 June 2018

1 reference

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STITCH: interaction networks of chemicals and proteins

21 June 2018

1 reference

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KEGG for linking genomes to life and the environment

21 June 2018

1 reference

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EzyPred: a top-down approach for predicting enzyme functional classes and subclasses

21 June 2018

1 reference

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Recent progress in protein subcellular location prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Recent Developments of the Chemistry Development Kit (CDK) - An Open-Source Java Library for Chemo- and Bioinformatics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Classification of protein quaternary structure by functional domain composition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

From genomics to chemical genomics: new developments in KEGG

21 June 2018

1 reference

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Predicting protein structural class by functional domain composition

21 June 2018

1 reference

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Structural bioinformatics and its impact to biomedical science

21 June 2018

1 reference

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Prediction of protein subcellular locations by GO-FunD-PseAA predictor

21 June 2018

1 reference

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Support Vector Machines for Predicting Membrane Protein Types by Using Functional Domain Composition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Do structurally similar molecules have similar biological activity?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments

21 June 2018

1 reference

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Assessing the accuracy of prediction algorithms for classification: an overview

21 June 2018

1 reference

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LIGAND: chemical database for enzyme reactions.

21 June 2018

1 reference

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Kinetic studies with the non-nucleoside HIV-1 reverse transcriptase inhibitor U-88204E.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

The quinoline U-78036 is a potent inhibitor of HIV-1 reverse transcriptase.

21 June 2018

1 reference

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Steady-state kinetic studies with the non-nucleoside HIV-1 reverse transcriptase inhibitor U-87201E.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Kinetics of processive nucleic acid polymerases and nucleases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

A new schematic method in enzyme kinetics.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Graphical rules for enzyme-catalysed rate laws

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

An extension of Chou's graphic rules for deriving enzyme kinetic equations to systems involving parallel reaction pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Microcomputer tools for steady-state enzyme kinetics.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Graphic rules in steady and non-steady state enzyme kinetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Applications of graph theory to enzyme kinetics and protein folding kinetics. Steady and non-steady-state systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Binding of CYP2C9 with diverse drugs and its implications for metabolic mechanism.

21 June 2018

1 reference

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ProtIdent: a web server for identifying proteases and their types by fusing functional domain and sequential evolution information

31 October 2018

1 reference

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Prediction of subcellular protein localization based on functional domain composition.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Predicting enzyme subclass by functional domain composition and pseudo amino acid composition.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Using functional domain composition to predict enzyme family classes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Multi-class protein fold recognition using support vector machines and neural networks.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098070

Graphical rules for non-steady state enzyme kinetic

10 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20513238

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Predicting protein fold pattern with functional domain and sequential evolution information

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20513238

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules

1 reference

28 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1021/CI00057A005

Identifiers

DOI

10.1186/1471-2105-11-293

1 reference

journals/bmcbi/ChenFCCL10

28 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

0 references

1 reference

28 July 2017

1 reference

PubMed ID

20513238