Thermodynamic characterization of naturally occurring RNA tetraloops (Q33611628)

28 July 2017

title

Thermodynamic characterization of naturally occurring RNA tetraloops (English)

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28 July 2017

3

Brent M Znosko

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28 July 2017

Justin P Sheehy

1

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28 July 2017

Amber R Davis

series ordinal

2

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28 July 2017

language of work or name

English

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publication date

4 January 2010

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28 July 2017

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28 July 2017

volume

16

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28 July 2017

issue

2

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28 July 2017

page(s)

417-429

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Thermodynamics and NMR studies on Duck, Heron and Human HBV encapsidation signals

28 July 2017

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21 June 2018

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21 June 2018

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Extending the Family of UNCG-like Tetraloop Motifs: NMR Structure of a CACG Tetraloop from Coxsackievirus B3

21 June 2018

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Structure of prokaryotic SECIS mRNA hairpin and its interaction with elongation factor SelB

21 June 2018

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Isolation and characterization of a family of stable RNA tetraloops with the motif YNMG that participate in tertiary interactions

21 June 2018

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A novel family of RNA tetraloop structure forms the recognition site for Saccharomyces cerevisiae RNase III.

21 June 2018

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The crystal structure of UUCG tetraloop

21 June 2018

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Structure of the 30S ribosomal subunit

21 June 2018

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A test of the model to predict unusually stable RNA hairpin loop stability

21 June 2018

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21 June 2018

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 June 2018

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Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

21 June 2018

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21 June 2018

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Compilation of tRNA sequences and sequences of tRNA genes

21 June 2018

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Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine

21 June 2018

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A network of heterogeneous hydrogen bonds in GNRA tetraloops

21 June 2018

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A model of the iron responsive element RNA hairpin loop structure determined from NMR and thermodynamic data

21 June 2018

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Crystal structure of a group I ribozyme domain: principles of RNA packing

21 June 2018

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21 June 2018

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21 June 2018

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Structure of the P1 Helix from Group I Self-splicing Introns

21 June 2018

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Solution Structure of the CUUG Hairpin Loop: A Novel RNA Tetraloop Motif

21 June 2018

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Exceptionally stable nucleic acid hairpins

21 June 2018

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Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994

21 June 2018

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Characterization of RNA hairpin loop stability

21 June 2018

1 reference

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Comparative and functional anatomy of group II catalytic introns--a review

21 June 2018

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On finding all suboptimal foldings of an RNA molecule

21 June 2018

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CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes

21 June 2018

1 reference

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Thermodynamic and spectroscopic study of bulge loops in oligoribonucleotides.

21 June 2018

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A thermodynamic study of unusually stable RNA and DNA hairpins

21 June 2018

1 reference

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Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Structure of an unusually stable RNA hairpin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Solution structure of an unusually stable RNA hairpin, 5GGAC(UUCG)GUCC

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

The nature of preferred hairpin structures in 16S-like rRNA variable regions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Contribution of the closing base pair to exceptional stability in RNA tetraloops: roles for molecular mimicry and electrostatic factors.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Thermodynamic characterization of naturally occurring RNA single mismatches with G-U nearest neighbors

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Thermodynamic characterization of single mismatches found in naturally occurring RNA.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Nearest neighbor parameters for inosine x uridine pairs in RNA duplexes.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Folding cooperativity in RNA and DNA is dependent on position in the helix.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Stability of RNA hairpin loops closed by AU base pairs

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Experimental and computational studies of the G[UUCG]C RNA tetraloop.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Comprehensive comparison of structural characteristics in eukaryotic cytoplasmic large subunit (23 S-like) ribosomal RNA.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811670

Assessment of a model for intron RNA secondary structure relevant to RNA self-splicing — a review

30 October 2018

1 reference

12 December 2020

Free energy contributions of G.U and other terminal mismatches to helix stability

1 reference

12 December 2020

Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs

1 reference

12 December 2020

A model for the stabilities of RNA hairpins based on a study of the sequence dependence of stability for hairpins of six nucleotides

1 reference

12 December 2020

Predicting thermodynamic properties of RNA

1 reference

12 December 2020

Improved parameters for the prediction of RNA hairpin stability

1 reference

12 December 2020

Thermodynamics of single mismatches in RNA duplexes

1 reference

12 December 2020

The Signal Recognition Particle Database (SRPDB)

1 reference

12 December 2020

Stability of RNA hairpins closed by wobble base pairs

1 reference

12 December 2020

Thermodynamic characterization of RNA duplexes containing naturally occurring 1 x 2 nucleotide internal loops

1 reference

12 December 2020

Thermodynamic characterization of the complete set of sequence symmetric tandem mismatches in RNA and an improved model for predicting the free energy contribution of sequence asymmetric tandem mismatches

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.1773110

1 reference

28 July 2017

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28 July 2017

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