Evolutionary insights on C4 photosynthetic subtypes in grasses from genomics and phylogenetics (Q33633526)

28 July 2017

title

Evolutionary insights on C4 photosynthetic subtypes in grasses from genomics and phylogenetics (English)

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28 July 2017

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3

Blaise Petitpierre

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28 July 2017

Pascal-Antoine Christin

series ordinal

1

object named as

Pascal-Antoine Christin

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28 July 2017

Nicolas Salamin

4

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Guillaume Besnard

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5

object named as

Guillaume Besnard

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28 July 2017

Emanuela Samaritani

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28 July 2017

language of work or name

English

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publication date

20 July 2009

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Genome Biology and Evolution

28 July 2017

published in

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28 July 2017

volume

1

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28 July 2017

page(s)

221-230

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Diversity of Kranz anatomy and biochemistry in C4 eudicots

28 July 2017

cites work

1 reference

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Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses

21 June 2018

1 reference

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Cloning, identification, expression analysis and phylogenetic relevance of two NADP-dependent malic enzyme genes from hexaploid wheat

21 June 2018

1 reference

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The Sorghum bicolor genome and the diversification of grasses

21 June 2018

1 reference

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Cell-type-specific differentiation of chloroplasts in C4 plants

21 June 2018

1 reference

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Evolutionary switch and genetic convergence on rbcL following the evolution of C4 photosynthesis

21 June 2018

1 reference

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Arabidopsis thaliana NADP-malic enzyme isoforms: high degree of identity but clearly distinct properties.

21 June 2018

1 reference

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PAML 4: phylogenetic analysis by maximum likelihood

21 June 2018

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A multi-treatment experimental system to examine photosynthetic differentiation in the maize leaf

21 June 2018

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Serial analysis of gene expression in sugarcane (Saccharum spp.) leaves revealed alternative C4 metabolism and putative antisense transcripts

21 June 2018

1 reference

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Darwinian evolution can follow only very few mutational paths to fitter proteins

21 June 2018

1 reference

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NADP-malate dehydrogenase gene evolution in Andropogoneae (Poaceae): gene duplication followed by sub-functionalization

21 June 2018

1 reference

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Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

The 'evolvability' of promiscuous protein functions

21 June 2018

1 reference

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Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

21 June 2018

1 reference

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MrBayes 3: Bayesian phylogenetic inference under mixed models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Evolution of C4 phosphoenolpyruvate carboxylase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Maize C4 NADP-malic enzyme. Expression in Escherichia coli and characterization of site-directed mutants at the putative nucleoside-binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Maize C4 and non-C4 NADP-dependent malic enzymes are encoded by distinct genes derived from a plastid-localized ancestor

21 June 2018

1 reference

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Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

21 June 2018

1 reference

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A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Differential regulation of transcripts encoding cytosolic NADP-malic enzyme in C3 and C4 Flaveria species

21 June 2018

1 reference

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Distinct but conserved functions for two chloroplastic NADP-malic enzyme isoforms in C3 and C4 Flaveria species

21 June 2018

1 reference

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Non-photosynthetic 'malic enzyme' from maize: a constituvely expressed enzyme that responds to plant defence inducers

21 June 2018

1 reference

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NADP-malic enzyme from plants: a ubiquitous enzyme involved in different metabolic pathways.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Codon-substitution models for heterogeneous selection pressure at amino acid sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Phosphoenolpyruvate carboxykinase is involved in the decarboxylation of aspartate in the bundle sheath of maize

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Evolution of C4 photosynthesis in flaveria species. Isoforms Of nadp-malic enzyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

The C3 plant Flaveria pringlei contains a plastidic NADP-malic enzyme which is orthologous to the C4 isoform of the C4 plant F. trinervia

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Primary structure of NADP-dependent malic enzyme in the dicotyledonous C4 plant Flaveria trinervia

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Characterization and expression of a NADP-malic enzyme cDNA induced by salt stress from the facultative crassulacean acid metabolism plant, Mesembryanthemum crystallinum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

NADP-malic enzyme from plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Phylogenomics of C(4) photosynthesis in sedges (Cyperaceae): multiple appearances and genetic convergence.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Integrating phylogeny into studies of C4 variation in the grasses.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Evolution of C(4) phosphoenolpyruvate carboxykinase in grasses, from genotype to phenotype

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Maize cytosolic NADP-malic enzyme (ZmCytNADP-ME): a phylogenetically distant isoform specifically expressed in embryo and emerging roots

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Nicotiana tabacum NADP-malic enzyme: cloning, characterization and analysis of biological role

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Oligocene CO2 decline promoted C4 photosynthesis in grasses.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Characterization of the NADP malic enzyme gene family in the facultative, single-cell C4 monocot Hydrilla verticillata.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

C4 Photosynthesis evolved in grasses via parallel adaptive genetic changes.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Evolution of C(4) phosphoenolpyruvate carboxylase in the genus Alternanthera: gene families and the enzymatic characteristics of the C(4) isozyme and its orthologues in C(3) and C(3)/C(4) Alternantheras.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

A comprehensive analysis of the NADP-malic enzyme gene family of Arabidopsis

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Maize recombinant non-C4 NADP-malic enzyme: a novel dimeric malic enzyme with high specific activity

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Four rice genes encoding NADP malic enzyme exhibit distinct expression profiles

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

An isozyme of the NADP-malic enzyme of a CAM plant, Aloe arborescens, with variation on conservative amino acid residues

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817415

Identification of Domains Involved in Tetramerization and Malate Inhibition of Maize C4-NADP-Malic Enzyme

30 October 2018

1 reference

12 December 2020

Poaceae genomes: going from unattainable to becoming a model clade for comparative plant genomics

1 reference

12 December 2020

A molecular phylogeny of the grass subfamily Panicoideae (Poaceae) shows multiple origins of C4 photosynthesis

1 reference

12 December 2020

Biochemical and cytological relationships in C4 plants

1 reference

12 December 2020

C4 photosynthesis, atmospheric CO2, and climate

1 reference

12 December 2020

NADP-malic enzyme isoforms in maize leaves

1 reference

12 December 2020

Identifiers

DOI

10.1093/GBE/EVP020

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28 July 2017

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28 July 2017

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