Synthetic circuit for exact adaptation and fold-change detection (Q33635520)

28 July 2017

title

Synthetic circuit for exact adaptation and fold-change detection (English)

1 reference

28 July 2017

Jongmin Kim

1

0 references

Richard M. Murray

object named as

Richard M Murray

series ordinal

4

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author name string

Ishan Khetarpal

series ordinal

2

1 reference

28 July 2017

Shaunak Sen

series ordinal

3

1 reference

28 July 2017

language of work or name

English

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publication date

11 April 2014

1 reference

28 July 2017

published in

Nucleic Acids Research

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28 July 2017

volume

42

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28 July 2017

issue

9

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28 July 2017

page(s)

6078-6089

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Creative Commons Attribution 3.0 Unported

28 July 2017

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Synthetic analog computation in living cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Response kinetics in the complex chemotaxis signalling pathway of Rhodobacter sphaeroides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

The utility of paradoxical components in biological circuits

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Nucleic acids for the rational design of reaction circuits

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

RNase E: at the interface of bacterial RNA processing and decay

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

A characterization of scale invariant responses in enzymatic networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Active, motor-driven mechanics in a DNA gel

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Genetic programs constructed from layered logic gates in single cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

A logic-gated nanorobot for targeted transport of molecular payloads

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Noninvasive inference of the molecular chemotactic response using bacterial trajectories.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Incoherent feedforward control governs adaptation of activated ras in a eukaryotic chemotaxis pathway

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Timing molecular motion and production with a synthetic transcriptional clock

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Synthetic incoherent feedforward circuits show adaptation to the amount of their genetic template

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Response rescaling in bacterial chemotaxis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Neural network computation with DNA strand displacement cascades

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Programming an in vitro DNA oscillator using a molecular networking strategy.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Synthetic in vitro transcriptional oscillators

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Dynamic DNA nanotechnology using strand-displacement reactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Fold-change detection and scalar symmetry of sensory input fields

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

DNA as a universal substrate for chemical kinetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Noncooperative interactions between transcription factors and clustered DNA binding sites enable graded transcriptional responses to environmental inputs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

The incoherent feedforward loop can provide fold-change detection in gene regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Dynamics and variability of ERK2 response to EGF in individual living cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Defining network topologies that can achieve biochemical adaptation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Modeling the chemotactic response of Escherichia coli to time-varying stimuli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Network motifs: theory and experimental approaches

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Construction of an in vitro bistable circuit from synthetic transcriptional switches

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Enzyme-free nucleic acid logic circuits

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Folding DNA to create nanoscale shapes and patterns

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

A vesicle bioreactor as a step toward an artificial cell assembly

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Spatiotemporal control of gene expression with pulse-generating networks.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

A deoxyribozyme-based molecular automaton

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Network motifs in the transcriptional regulation network of Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Laser-mediated, site-specific inactivation of RNA transcripts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Robustness in bacterial chemotaxis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Kinetic mechanism of transcription initiation by bacteriophage T7 RNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

In vitro selection of RNA molecules that bind specific ligands

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4027175

Transient dynamic phenotypes as criteria for model discrimination: fold-change detection in Rhodobacter sphaeroides chemotaxis

21 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU233

Ensemble Bayesian analysis of bistability in a synthetic transcriptional switch

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU233

NUPACK: Analysis and design of nucleic acid systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU233

Control of DNA strand displacement kinetics using toehold exchange.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU233

Substrate recognition and catalysis by the exoribonuclease RNase R.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU233

A mechanical metamaterial made from a DNA hydrogel.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU233

Predator-prey molecular ecosystems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU233

Adaptation of retinal processing to image contrast and spatial scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU233

Interrupting the template strand of the T7 promoter facilitates translocation of the DNA during initiation, reducing transcript slippage and the release of abortive products

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24728988

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU233

1 reference

28 July 2017

1 reference

28 July 2017

1 reference