Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid (Q33638020)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10515926%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

title

Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid (English)

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1 November 2019

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T Ali Azam

1

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1 November 2019

A Iwata

2

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1 November 2019

A Nishimura

3

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1 November 2019

S Ueda

4

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1 November 2019

A Ishihama

5

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1 November 2019

language of work or name

English

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publication date

1 October 1999

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1 November 2019

published in

Journal of Bacteriology

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1 November 2019

volume

181

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1 November 2019

page(s)

6361-6370

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1 November 2019

issue

20

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Interplay of global regulators and cell physiology in the general stress response of Escherichia coli

1 November 2019

cites work

1 reference

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Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival

21 June 2018

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Growth phase coupled modulation of Escherichia coli ribosomes.

21 June 2018

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The crystal structure of Dps, a ferritin homolog that binds and protects DNA

21 June 2018

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Molecular aspects of the E. coli nucleoid protein, H-NS: a central controller of gene regulatory networks

21 June 2018

1 reference

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Adaptation of gene expression in stationary phase bacteria

21 June 2018

1 reference

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Altered 3'-terminal RNA structure in phage Qbeta adapted to host factor-less Escherichia coli

21 June 2018

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Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps.

21 June 2018

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H-NS: a modulator of environmentally regulated gene expression.

21 June 2018

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DnaA initiator--also a transcription factor

21 June 2018

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Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli W3110.

21 June 2018

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Effects of nutrition and growth rate on Lrp levels in Escherichia coli

21 June 2018

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Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions

21 June 2018

1 reference

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The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli

21 June 2018

1 reference

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Transcriptional activation of promoters of the superoxide and multiple antibiotic resistance regulons by Rob, a binding protein of the Escherichia coli origin of chromosomal replication

21 June 2018

1 reference

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Leucine-responsive regulatory protein: a global regulator of gene expression in E. coli

21 June 2018

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A novel binding protein of the origin of the Escherichia coli chromosome.

21 June 2018

1 reference

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Properties of DNA-binding of HU heterotypic and homotypic dimers from Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

An analogue of the DnaJ molecular chaperone in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q beta

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Growth phase variation of integration host factor level in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

The leucine-responsive regulatory protein, a global regulator of metabolism in Escherichia coli.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Plasmids bearing hfq and the hns-like gene stpA complement hns mutants in modulating arginine decarboxylase gene expression in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Histones, HMG, HU, IHF: Même combat

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of sigma 70 and sigma 38.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Sequence, regulation, and functions of fis in Salmonella typhimurium

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

H1a, an E. coli DNA-binding protein which accumulates in stationary phase, strongly compacts DNA in vitro

21 June 2018

1 reference

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Protein HU in the enzymatic replication of the chromosomal origin of Escherichia coli

21 June 2018

1 reference

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Proteins Controlling the Helical Structure of DNA

21 June 2018

1 reference

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Purification and properties of the Escherichia coli protein factor required for lambda integrative recombination

21 June 2018

1 reference

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E. coli integration host factor binds to specific sites in DNA

21 June 2018

1 reference

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The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites.

21 June 2018

1 reference

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Host protein requirements for in vitro site-specific DNA inversion.

21 June 2018

1 reference

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Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli

21 June 2018

1 reference

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Histonelike proteins of bacteria

21 June 2018

1 reference

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Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

The dnaA protein of Escherichia coli. Abundance, improved purification, and membrane binding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Chromosome partitioning in Escherichia coli: novel mutants producing anucleate cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

A novel protein binds a key origin sequence to block replication of an E. coli minichromosome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

More than just "histone-like" proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Characterization of Lrp, and Escherichia coli regulatory protein that mediates a global response to leucine

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Identification and sequence determination of the host factor gene for bacteriophage Q beta

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

The leucine-Lrp regulon in E. coli: A global response in search of a raison d'Être

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

IciA protein, a specific inhibitor of initiation of Escherichia coli chromosomal replication

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

The Fis protein: it's not just for DNA inversion anymore

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Nucleotide sequence of a newly-identified Escherichia coli gene, stpA, encoding an H-NS-like protein.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Histone-like proteins are required for cell growth and constraint of supercoils in DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

E. coli DNA binding protein HU forms nucleosome-like structure with circular double-stranded DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Specific association of two homologous DNA-binding proteins to the native 30-S ribosomal subunits of Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Promoter selectivity of Escherichia coli RNA polymerase E sigma 70 and E sigma 38 holoenzymes. Effect of DNA supercoiling.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

An Escherichia coli curved DNA-binding protein whose expression is affected by the stationary phase-specific sigma factor sigma S.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=103771

Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity

30 October 2018

1 reference

12 December 2020

Continuous synthesis of the dnaA gene product of Escherichia coli in the cell cycle

1 reference

12 December 2020

Coupling of Escherichia coli hns mRNA levels to DNA synthesis by autoregulation: implications for growth phase control

1 reference

12 December 2020

FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli

1 reference

12 December 2020

Purification and properties of the Escherichia coli host factor required for inversion of the G segment in bacteriophage Mu

1 reference

12 December 2020

Protein HU binds specifically to kinked DNA

1 reference

12 December 2020

An analogue of the DnaJ molecular chaperone whose expression is controlled by sigma s during the stationary phase and phosphate starvation in Escherichia coli

1 reference

12 December 2020

10.1128/JB.181.20.6361-6370.1999

Identifiers

DOI

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1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10515926%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

1 reference