Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry (Q33639352)

28 July 2017

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry (English)

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liquid chromatography-tandem mass spectrometry

28 July 2017

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David L Tabb

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Daniel C. Liebler

object named as

Daniel C Liebler

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author name string

Lorenzo Vega-Montoto

2

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28 July 2017

Paul A Rudnick

3

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28 July 2017

Asokan Mulayath Variyath

4

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28 July 2017

Amy-Joan L Ham

5

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28 July 2017

David M Bunk

6

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28 July 2017

Lisa E Kilpatrick

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28 July 2017

Dean D Billheimer

8

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Ronald K Blackman

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Helene L Cardasis

10

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Steven A Carr

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Karl R Clauser

12

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Jacob D Jaffe

13

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Kevin A Kowalski

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Thomas A Neubert

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Fred E Regnier

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Birgit Schilling

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Tony J Tegeler

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Mu Wang

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Pei Wang

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Jeffrey R Whiteaker

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Lisa J Zimmerman

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Susan J Fisher

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Bradford W Gibson

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Christopher R Kinsinger

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Mehdi Mesri

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Henry Rodriguez

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Stephen E Stein

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Amanda G Paulovich

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Cliff Spiegelman

32

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28 July 2017

language of work or name

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1 February 2010

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Journal of Proteome Research

28 July 2017

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9

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2

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28 July 2017

761-776

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describes a project that uses

28 July 2017

liquid chromatography-tandem mass spectrometry

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based on heuristic

inferred from title

cites work

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Directed sample interrogation utilizing an accurate mass exclusion-based data-dependent acquisition strategy (AMEx).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Post analysis data acquisition for the iterative MS/MS sampling of proteomics mixtures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

ProteoWizard: open source software for rapid proteomics tools development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Proteomic parsimony through bipartite graph analysis improves accuracy and transparency

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Protein biomarker discovery and validation: the long and uncertain path to clinical utility

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Multidimensional protein identification technology (MudPIT): technical overview of a profiling method optimized for the comprehensive proteomic investigation of normal and diseased heart tissue

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Standardizing global gene expression analysis between laboratories and across platforms.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

The ABC's (and XYZ's) of peptide sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Statistical methods for assessing agreement between two methods of clinical measurement

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Repeatability of peptide identifications in shotgun proteome analysis employing off-line two-dimensional chromatographic separations and ion-trap MS.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Signal maps for mass spectrometry-based comparative proteomics.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Valid data from large-scale proteomics studies.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

Improvement of Recovery and Repeatability in Liquid Chromatography−Mass Spectrometry Analysis of Peptides

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818771

A method for reducing the time required to match protein sequences with tandem mass spectra

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19921851

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evaluation of confidence and reproducibility in quantitative proteomics performed by a capillary isoelectric focusing-based proteomic platform coupled with a spectral counting approach

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19921851

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR9006365

1 reference

28 July 2017

1 reference

28 July 2017

1 reference