Comparing interfacial dynamics in protein-protein complexes: an elastic network approach (Q33651752)

28 July 2017

title

Comparing interfacial dynamics in protein-protein complexes: an elastic network approach (English)

1 reference

28 July 2017

4

Ruth Nussinov

1 reference

28 July 2017

3

Ozlem Keskin

1 reference

28 July 2017

Andrea Zen

1

1 reference

28 July 2017

Cristian Micheletti

series ordinal

2

1 reference

28 July 2017

publication date

8 August 2010

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28 July 2017

published in

BMC Structural Biology

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28 July 2017

volume

10

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28 July 2017

page(s)

26

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PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains

28 July 2017

cites work

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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The Extent of Cooperativity of Protein Motions Observed with Elastic Network Models Is Similar for Atomic and Coarser-Grained Models

28 July 2018

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28 July 2018

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28 July 2018

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Intrinsic dynamics of an enzyme underlies catalysis

28 July 2018

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28 July 2018

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Functional dynamics of PDZ binding domains: a normal-mode analysis

28 July 2018

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Anchor residues in protein-protein interactions

28 July 2018

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A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications

28 July 2018

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28 July 2018

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Binding of small molecules to an adaptive protein-protein interface

28 July 2018

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The role of dynamics in enzyme activity

28 July 2018

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Simplified normal mode analysis of conformational transitions in DNA-dependent polymerases: the elastic network model

28 July 2018

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Protein functional epitopes: hot spots, dynamics and combinatorial libraries

28 July 2018

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Conformational change of proteins arising from normal mode calculations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927602

Anisotropy of fluctuation dynamics of proteins with an elastic network model

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927602

Proteins with similar architecture exhibit similar large-scale dynamic behavior

28 July 2018

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28 July 2018

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28 July 2018

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The atomic structure of protein-protein recognition sites

28 July 2018

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Empirical solvent-mediated potentials hold for both intra-molecular and inter-molecular inter-residue interactions

28 July 2018

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Protein folding via binding and vice versa

28 July 2018

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28 July 2018

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Analysis of protein-protein interaction sites using surface patches

28 July 2018

1 reference

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Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

28 July 2018

1 reference

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Principles of protein-protein interactions

28 July 2018

1 reference

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Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques

28 July 2018

1 reference

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Large-scale motions and electrostatic properties of furin and HIV-1 protease

28 July 2018

1 reference

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NMR identification of transient complexes critical to adenylate kinase catalysis

30 October 2018

1 reference

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Essential dynamics of helices provide a functional classification of EF-hand proteins

30 October 2018

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30 October 2018

1 reference

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Symmetry, form, and shape: guiding principles for robustness in macromolecular machines.

30 October 2018

1 reference

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Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927602

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30 October 2018

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Favorable scaffolds: proteins with different sequence, structure and function may associate in similar ways

30 October 2018

1 reference

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Evolutionarily conserved functional mechanics across pepsin-like and retroviral aspartic proteases

30 October 2018

1 reference

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Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927602

Accurate and efficient description of protein vibrational dynamics: comparing molecular dynamics and Gaussian models

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927602

Structural characterisation and functional significance of transient protein-protein interactions

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2927602

Sequence and structural differences between enzyme and nonenzyme homologs

30 October 2018

1 reference

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Intrinsic disorder and protein function

30 October 2018

1 reference

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Conformations of proteins in equilibrium.

30 October 2018

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Protein-protein interfaces: analysis of amino acid conservation in homodimers

30 October 2018

1 reference

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Transition-state ensemble in enzyme catalysis: possibility, reality, or necessity?

30 October 2018

1 reference

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Analysis of domain motions by approximate normal mode calculations

30 October 2018

1 reference

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The contribution of vibrational entropy to molecular association. The dimerization of insulin.

30 October 2018

1 reference

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30 October 2018

1 reference

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Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

30 October 2018

1 reference

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Dissecting protein-protein recognition sites

30 October 2018

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Energy landscape of a native protein: jumping-among-minima model

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The relationship between the flexibility of proteins and their conformational states on forming protein-protein complexes with an application to protein-protein docking

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Convergent dynamics in the protease enzymatic superfamily

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Specificity in protein-protein recognition: conserved Im9 residues are the major determinants of stability in the colicin E9 DNase-Im9 complex

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Identifiers

DOI

10.1186/1472-6807-10-26

1 reference

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference