Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications (Q33657722)

28 July 2017

Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications (English)

1 reference

28 July 2017

Artur Veloso

1

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28 July 2017

Killeen S Kirkconnell

2

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28 July 2017

Brian Magnuson

3

1 reference

28 July 2017

Benjamin Biewen

4

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28 July 2017

Michelle T Paulsen

5

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28 July 2017

Thomas E Wilson

6

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28 July 2017

Mats Ljungman

7

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28 July 2017

8 April 2014

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28 July 2017

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28 July 2017

24

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28 July 2017

6

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28 July 2017

896-905

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describes a project that uses

28 July 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4032854

based on heuristic

inferred from PubMed Central ID database lookup

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Genome-wide transcriptional effects of the anti-cancer agent camptothecin

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Use of Bru-Seq and BruChase-Seq for genome-wide assessment of the synthesis and stability of RNA

14 July 2018

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14 July 2018

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A medicinal chemistry perspective for targeting histone H3 lysine-79 methyltransferase DOT1L.

14 July 2018

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Methylation of histone H3 on lysine 79 associates with a group of replication origins and helps limit DNA replication once per cell cycle

14 July 2018

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Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

14 July 2018

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Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells

14 July 2018

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Coordinated regulation of synthesis and stability of RNA during the acute TNF-induced proinflammatory response

14 July 2018

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14 July 2018

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14 July 2018

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Transcription-associated histone modifications and cryptic transcription

14 July 2018

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14 July 2018

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Transcription factors: from enhancer binding to developmental control

14 July 2018

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Functions of DNA methylation: islands, start sites, gene bodies and beyond

14 July 2018

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DBIRD complex integrates alternative mRNA splicing with RNA polymerase II transcript elongation

14 July 2018

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Chromatin-modifying enzymes as modulators of reprogramming

14 July 2018

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PR-Set7 and H4K20me1: at the crossroads of genome integrity, cell cycle, chromosome condensation, and transcription

14 July 2018

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Co-transcriptional regulation of alternative pre-mRNA splicing

14 July 2018

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The transcription cycle in eukaryotes: from productive initiation to RNA polymerase II recycling

14 July 2018

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

14 July 2018

1 reference

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Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells

14 July 2018

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Evidence for intron length conservation in a set of mammalian genes associated with embryonic development

14 July 2018

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Mapping and analysis of chromatin state dynamics in nine human cell types

14 July 2018

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Intronic delay is essential for oscillatory expression in the segmentation clock

14 July 2018

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The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells.

14 July 2018

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A wave of nascent transcription on activated human genes

14 July 2018

1 reference

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Rates of in situ transcription and splicing in large human genes

14 July 2018

1 reference

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Transcription factories: gene expression in unions?

14 July 2018

1 reference

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Spt6 enhances the elongation rate of RNA polymerase II in vivo

14 July 2018

1 reference

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Intron delays and transcriptional timing during development

14 July 2018

1 reference

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In vivo dynamics of RNA polymerase II transcription.

14 July 2018

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A chromatin landmark and transcription initiation at most promoters in human cells

14 July 2018

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Unsupervised segmentation of continuous genomic data

14 July 2018

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Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide

14 July 2018

1 reference

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

14 July 2018

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BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

14 July 2018

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hDOT1L links histone methylation to leukemogenesis

14 July 2018

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Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo

14 July 2018

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Structure of the catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase

14 July 2018

1 reference

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4032854

PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4032854

Cockayne syndrome group B protein enhances elongation by RNA polymerase II

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4032854

Presence of negative torsional tension in the promoter region of the transcriptionally poised dihydrofolate reductase gene in vivo

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4032854

Localized torsional tension in the DNA of human cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4032854

Use of within-array replicate spots for assessing differential expression in microarray experiments.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4032854

The anti-cancer drug camptothecin inhibits elongation but stimulates initiation of RNA polymerase II transcription.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4032854

Inhibitors of transcription such as 5,6-dichloro-1-beta-D-ribofuranosylbenzimidazole and isoquinoline sulfonamide derivatives (H-8 and H-7) promote dephosphorylation of the carboxyl-terminal domain of RNA polymerase II largest subunit

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24714810

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.171405.113

1 reference

28 July 2017

1 reference

28 July 2017

1 reference