General trends in trace element utilization revealed by comparative genomic analyses of Co, Cu, Mo, Ni, and Se. (Q33661673)

28 July 2017

General trends in trace element utilization revealed by comparative genomic analyses of Co, Cu, Mo, Ni, and Se. (English)

1 reference

28 July 2017

1 reference

2

Vadim N Gladyshev

1 reference

28 July 2017

1

Yan Zhang

1 reference

PubMed ID

19887375

28 July 2017

language of work or name

English

0 references

publication date

2 November 2009

1 reference

Journal of Biological Chemistry

28 July 2017

1 reference

28 July 2017

285

1 reference

28 July 2017

5

1 reference

28 July 2017

3393-3405

1 reference

Dictyostelium discoideum--a model for many reasons

28 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

The selenoproteome of Clostridium sp. OhILAs: characterization of anaerobic bacterial selenoprotein methionine sulfoxide reductase A

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Identification of a copper-binding metallothionein in pathogenic mycobacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Relaxation of Selective Constraints Causes Independent Selenoprotein Extinction in Insect Genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Trends in selenium utilization in marine microbial world revealed through the analysis of the global ocean sampling (GOS) project

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Mechanism of Cu+-transporting ATPases: soluble Cu+ chaperones directly transfer Cu+ to transmembrane transport sites.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Reduced reliance on the trace element selenium during evolution of mammals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Comparative genomic analyses of copper transporters and cuproproteomes reveal evolutionary dynamics of copper utilization and its link to oxygen

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Evolutionary dynamics of eukaryotic selenoproteomes: large selenoproteomes may associate with aquatic life and small with terrestrial life

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

High content of proteins containing 21st and 22nd amino acids, selenocysteine and pyrrolysine, in a symbiotic deltaproteobacterium of gutless worm Olavius algarvensis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

The role of zinc in life: a review

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Selenoproteins and their impact on human health through diverse physiological pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Cell biology of molybdenum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Copper homeostasis in eukaryotes: teetering on a tightrope

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Comparative genomics of regulation of heavy metal resistance in Eubacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Molybdenum cofactor biosynthesis and molybdenum enzymes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Comparative and functional genomic analysis of prokaryotic nickel and cobalt uptake transporters: evidence for a novel group of ATP-binding cassette transporters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Genomics, metagenomics and proteomics in biomining microorganisms.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Identification and characterization of a novel Cut family cDNA that encodes human copper transporter protein CutC

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Evolution of selenium utilization traits

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

The metal permease ZupT from Escherichia coli is a transporter with a broad substrate spectrum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Trace element risk assessment: essentiality vs. toxicity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Comparative genomics of bacterial zinc regulons: enhanced ion transport, pathogenesis, and rearrangement of ribosomal proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Comparative genomics of the vitamin B12 metabolism and regulation in prokaryotes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Escherichia coli mechanisms of copper homeostasis in a changing environment.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Selenium, an antioxidant nutrient

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Substrate specificity of nickel/cobalt permeases: insights from mutants altered in transmembrane domains I and II.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

How selenium has altered our understanding of the genetic code

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Multidrug efflux pumps and antimicrobial resistance in Pseudomonas aeruginosa and related organisms.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

21 June 2018

Nickel-binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

The RND permease superfamily: an ancient, ubiquitous and diverse family that includes human disease and development proteins.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Identification of the Escherichia coli K-12 Nramp orthologue (MntH) as a selective divalent metal ion transporter

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Nickel transport systems in microorganisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

The COG database: a tool for genome-scale analysis of protein functions and evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

New mammalian selenocysteine-containing proteins identified with an algorithm that searches for selenocysteine insertion sequence elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Trace element deficiency and toxicity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Cytochrome c oxidase: catalytic cycle and mechanisms of proton pumping--a discussion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Review of the scientific basis for establishing the essentiality of trace elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

The ZnuABC high-affinity zinc uptake system and its regulator Zur in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

A genomic perspective on protein families

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

A family of gram-negative bacterial outer membrane factors that function in the export of proteins, carbohydrates, drugs and heavy metals from gram-negative bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Selenium in health and disease: a review

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Cellular copper transport

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Selenium metabolism in micro-organisms.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Molecular characterization of a copper transport protein in S. cerevisiae: an unexpected role for copper in iron transport

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

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P-type ATPase from the cyanobacterium Synechococcus 7942 related to the human Menkes and Wilson disease gene products

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Molecular mechanisms of copper resistance and accumulation in bacteria

21 June 2018

1 reference

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Genetic analysis of the modABCD (molybdate transport) operon of Escherichia coli

21 June 2018

1 reference

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The essential trace elements

21 June 2018

1 reference

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Urea carboxylase and allophanate hydrolase are components of a multifunctional protein in yeast

21 June 2018

1 reference

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Basic local alignment search tool

21 June 2018

1 reference

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Zinc coordination, function, and structure of zinc enzymes and other proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Selenocysteine: the 21st amino acid

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Binding and detoxification of heavy metals in lower vertebrates with reference to metallothionein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Zinc proteins: enzymes, storage proteins, transcription factors, and replication proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823458

Cation-dependent uptake of zinc in human fibroblasts.

21 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

Magnesium, manganese, and divalent cation transport assays in intact cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

Dynamic evolution of selenocysteine utilization in bacteria: a balance between selenoprotein loss and evolution of selenocysteine from redox active cysteine residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

Molybdoproteomes and evolution of molybdenum utilization

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

An algorithm for identification of bacterial selenocysteine insertion sequence elements and selenoprotein genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

Occurrence of copper proteins through the three domains of life: a bioinformatic approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

Two Menkes-type atpases supply copper for photosynthesis in Synechocystis PCC 6803.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

A copper metallochaperone for photosynthesis and respiration reveals metal-specific targets, interaction with an importer, and alternative sites for copper acquisition

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

A hint to search for metalloproteins in gene banks

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

Knock down of Caenorhabditis elegans cutc-1 exacerbates the sensitivity toward high levels of copper.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

Purification and biochemical characterization of simplified eukaryotic nitrate reductase expressed in Pichia pastoris

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

Purification and properties of cobalamin-independent methionine synthase from Candida albicans and Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

The Hsp90/Cdc37p chaperone system is a determinant of molybdate resistance in Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

Structure of the molybdopterin-bound Cnx1G domain links molybdenum and copper metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.071746

Probing the role of copper in the biosynthesis of the molybdenum cofactor in Escherichia coli and Rhodobacter sphaeroides

21 January 2018

1 reference

12 December 2020

Oxidative stress and iron homeostasis: mechanistic and health aspects

1 reference

12 December 2020

Copper homeostasis in Enterococcus hirae

1 reference

12 December 2020

Further characterization of the assimilatory nitrate reductase from the yeast Candida nitratophila

1 reference

12 December 2020

Biosynthesis of the iron-molybdenum cofactor of nitrogenase

1 reference

12 December 2020

Nickel-iron-selenium hydrogenase

1 reference

12 December 2020

Manganese transport in the cyanobacterium Synechocystis sp. PCC 6803

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M109.071746

1 reference

28 July 2017

1 reference

28 July 2017

1 reference

PubMed ID

19887375