Characterization of archaeal community in contaminated and uncontaminated surface stream sediments (Q33666980)

28 July 2017

title

Characterization of archaeal community in contaminated and uncontaminated surface stream sediments (English)

1 reference

28 July 2017

Jennifer J Mosher

3

0 references

Meghan M Drake

Meghan M Drake

8

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Mircea Podar

Mircea Podar

9

0 references

Steven D Brown

Steven D Brown

10

0 references

Tatyana Vishnivetskaya

Tatiana A Vishnivetskaya

2

0 references

Anthony V Palumbo

Anthony V Palumbo

11

0 references

Liyuan Liang

Liyuan Liang

7

0 references

Scott C. Brooks

Scott C Brooks

6

0 references

author name string

Iris Porat

1

1 reference

28 July 2017

Craig C Brandt

4

1 reference

28 July 2017

Zamin K Yang

5

1 reference

28 July 2017

publication date

20 August 2010

1 reference

28 July 2017

1 reference

28 July 2017

volume

60

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28 July 2017

issue

4

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28 July 2017

page(s)

784-795

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Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

28 July 2017

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21 June 2018

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21 June 2018

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Bacterial and archaeal phylogenetic diversity of a cold sulfur-rich spring on the shoreline of Lake Erie, Michigan

21 June 2018

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Life without light: microbial diversity and evidence of sulfur- and ammonium-based chemolithotrophy in Movile Cave

21 June 2018

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Methanosphaerula palustris gen. nov., sp. nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland

21 June 2018

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Methanolobus profundi sp. nov., a methylotrophic methanogen isolated from deep subsurface sediments in a natural gas field

21 June 2018

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Diversity and stratification of archaea in a hypersaline microbial mat

21 June 2018

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

21 June 2018

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Molecular studies on the microbial diversity associated with mining-impacted Coeur d'Alene River sediments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Dominance of putative marine benthic Archaea in Qinghai Lake, north-western China

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Dynamics of the methanogenic archaeal community during plant residue decomposition in an anoxic rice field soil

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Changes in coral-associated microbial communities during a bleaching event

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Query-dependent banding (QDB) for faster RNA similarity searches

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Archaeal and bacterial community composition of sediment and plankton from a suboxic freshwater pond

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Variation in microbial community composition and culturability in the rhizosphere of Leucanthemopsis alpina (L.) Heywood and adjacent bare soil along an alpine chronosequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Isolation of a novel acidiphilic methanogen from an acidic peat bog.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Methanosarcina acetivorans sp. nov., an Acetotrophic Methane-Producing Bacterium Isolated from Marine Sediments

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Isolation of Methanobacterium bryantii from a Deep Aquifer by Using a Novel Broth-Antibiotic Disk Method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Community analysis of a mercury hot spring supports occurrence of domain-specific forms of mercuric reductase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Phylogenetic diversity and ecology of environmental Archaea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Isolation of an autotrophic ammonia-oxidizing marine archaeon

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Archaeal diversity along a soil salinity gradient prone to disturbance.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Genomic studies of uncultivated archaea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Occurrence and characterization of mercury resistance in the hyperthermophilic archaeon Sulfolobus solfataricus by use of gene disruption

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of okhotsk.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Bacterial and archaeal populations associated with freshwater ferromanganous micronodules and sediments.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Archaeal population dynamics during sequential reduction processes in rice field soil

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Methanobacterium oryzae sp. nov., a novel methanogenic rod isolated from a Philippines ricefield

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Isolation and characterization of Methanomethylovorans hollandica gen. nov., sp. nov., isolated from freshwater sediment, a methylotrophic methanogen able to grow on dimethyl sulfide and methanethiol

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Abundance and diversity of Archaea in heavy-metal-contaminated soils

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Everything in moderation: archaea as 'non-extremophiles'.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Phylogenetic analysis of nonthermophilic members of the kingdom crenarchaeota and their diversity and abundance in soils

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Methanobacterium subterraneum sp. nov., a new alkaliphilic, eurythermic and halotolerant methanogen isolated from deep granitic groundwater

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Crenarchaeota in Lake Michigan sediment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

DNA sequencing with chain-terminating inhibitors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Trophic links between fermenters and methanogens in a moderately acidic fen soil.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Donor-dependent extent of uranium reduction for bioremediation of contaminated sediment microcosms

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

High archaeal richness in the water column of a freshwater sulfurous karstic lake along an interannual study

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Determination of the Formation Constants of Ternary Complexes of Uranyl and Carbonate with Alkaline Earth Metals (Mg2+, Ca2+, Sr2+, and Ba2+) Using Anion Exchange Method

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Vertical distribution of structure and function of the methanogenic archaeal community in Lake Dagow sediment.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Methanogenic pathway and archaeal community structure in the sediment of eutrophic Lake Dagow: effect of temperature

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

Community analysis of methanogenic archaea within a riparian flooding gradient

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2974187

A cold-loving crenarchaeon is a substantial part of a novel microbial community in cold sulphidic marsh water

30 October 2018

1 reference

12 December 2020

Binding, distribution, and plant uptake of mercury in a soil from Oak Ridge, Tennessee, USA

1 reference

12 December 2020

Extraction of oxidized and reduced forms of uranium from contaminated soils: effects of carbonate concentration and pH

1 reference

12 December 2020

Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization(1)

1 reference

12 December 2020

Multivariate Analysis of Ecological Data using CANOCO

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1017/CBO9780511615146

Identifiers

DOI

10.1007/S00248-010-9734-2

1 reference

Dimensions Publication ID

28 July 2017

1000100443

0 references

Fatcat ID

release_yzkpovl37zg45hru2x3lnl4cyy

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/yzkpovl37zg45hru2x3lnl4cyy

24 November 2022

mapped directly with Wikidata item

PMC publication ID

2974187

1 reference

28 July 2017

1 reference