Pyrosequence read length of 16S rRNA gene affects phylogenetic assignment of plant-associated bacteria (Q33674820)

28 July 2017

title

Pyrosequence read length of 16S rRNA gene affects phylogenetic assignment of plant-associated bacteria (English)

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28 July 2017

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Takashi Okubo

1

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28 July 2017

Seishi Ikeda

2

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28 July 2017

Akifumi Yamashita

3

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28 July 2017

Kimihiro Terasawa

4

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28 July 2017

Kiwamu Minamisawa

5

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28 July 2017

publication date

1 January 2012

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Microbes and environments / JSME

28 July 2017

published in

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28 July 2017

volume

27

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28 July 2017

issue

2

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28 July 2017

page(s)

204-208

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Changes in population occupancy of Bradyrhizobia under different temperature regimes

28 July 2017

cites work

1 reference

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A great leap forward in microbial ecology.

21 June 2018

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The cbbL gene is required for thiosulfate-dependent autotrophic growth of Bradyrhizobium japonicum

21 June 2018

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Seasonal change in methanotrophic diversity and populations in a rice field soil assessed by DNA-stable isotope probing and quantitative real-time PCR.

21 June 2018

1 reference

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TonB-dependent receptors in nitrogen-fixing nodulating bacteria

21 June 2018

1 reference

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Nodulation-dependent communities of culturable bacterial endophytes from stems of field-grown soybeans.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

Phylogenetic and functional diversity of denitrifying bacteria isolated from various rice paddy and rice-soybean rotation fields.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

Community shifts of soybean stem-associated bacteria responding to different nodulation phenotypes and N levels.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

Development of a bacterial cell enrichment method and its application to the community analysis in soybean stems.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

Accuracy and quality of massively parallel DNA pyrosequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

Short pyrosequencing reads suffice for accurate microbial community analysis

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036018

Expressed nifH Genes of Endophytic Bacteria Detected in Field-Grown Sweet Potatoes (Ipomoea batatas L.).

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22791055

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1264/JSME2.ME11258

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28 July 2017

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28 July 2017

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