Evaluation of methods for the extraction of DNA from drinking water distribution system biofilms (Q33674864)

28 July 2017

Evaluation of methods for the extraction of DNA from drinking water distribution system biofilms (English)

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28 July 2017

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Wen-Tso Liu

5

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Gary L Andersen

object named as

Gary L Andersen

3

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author name string

Chiachi Hwang

1

1 reference

PubMed ID

22075624

28 July 2017

Fangqiong Ling

2

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PubMed ID

22075624

28 July 2017

Mark W LeChevallier

4

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28 July 2017

10 November 2011

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Microbes and environments / JSME

28 July 2017

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28 July 2017

27

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28 July 2017

1

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28 July 2017

9-18

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Pyrosequencing analysis of bacterial biofilm communities in water meters of a drinking water distribution system

28 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Biofilm bacterial communities and abundance in a full-scale drinking water distribution system in Shanghai.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Negative effects of sample pooling on PCR-based estimates of soil microbial richness and community structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

High abundance of ammonia-oxidizing Archaea in coastal waters, determined using a modified DNA extraction method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Extracting nucleic acids from activated sludge which reflect community population diversity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Reversible shift in the alpha-, beta- and gamma-proteobacteria populations of drinking water biofilms during discontinuous chlorination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Changes of the bacterial assemblages throughout an urban drinking water distribution system.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Innovative methods for soil DNA purification tested in soils with widely differing characteristics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Investigation of total bacterial and ammonia-oxidizing bacterial community composition in a full-scale aerated submerged biofilm reactor for drinking water pretreatment in China

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Identification of active bacterial communities in a model drinking water biofilm system using 16S rRNA-based clone libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

A simple, efficient method for the separation of humic substances and DNA from environmental samples.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

DNA extraction procedure: a critical issue for bacterial diversity assessment in marine sediments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Methods for microbial DNA extraction from soil for PCR amplification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

DNA recovery from soils of diverse composition.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

An evaluation of commercial DNA extraction kits for the isolation of bacterial spore DNA from soil

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Long-term effects of disinfectants on the community composition of drinking water biofilms

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Microbial diversity in biofilms on water distribution pipes of different materials

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

DNA extraction procedure affects organic-aggregate-attached bacterial community profiles from a shallow eutrophic lake

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Impact of orthophosphate addition on biofilm development in drinking water distribution systems

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Seasonal variation in communities of ammonia-oxidizing bacteria based on polymerase chain reaction - denaturing gradient gel electrophoresis in a biofilm reactor for drinking water pretreatment

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Prevalence of bacterial pathogens in biofilms of drinking water distribution systems.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036026

Presence of potential bacterial pathogens in a municipal drinking water supply system

30 October 2018

1 reference

12 December 2020

Detection of Bacillus cereus group bacteria from cardboard and paper with real-time PCR

1 reference

12 December 2020

A comparison of five methods for extraction of bacterial DNA from human faecal samples

1 reference

12 December 2020

Comparison of methods for the extraction of DNA from stream epilithic biofilms

1 reference

12 December 2020

Convenient determination of DNA extraction efficiency using an external DNA recovery standard and quantitative-competitive PCR

1 reference

12 December 2020

Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems

1 reference

12 December 2020

Identifiers

DOI

10.1264/JSME2.ME11132

1 reference

28 July 2017

1 reference

28 July 2017

1 reference

PubMed ID

22075624