Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly (Q33679280)

28 July 2017

title

Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly (English)

1 reference

28 July 2017

main subject

Rhodobacter sphaeroides

object named as

Rhodobacter sphaeroides

1 reference

based on heuristic

inferred from title

whole genome sequencing

1 reference

Shiguo Zhou

1

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28 July 2017

Erika Kvikstad

2

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28 July 2017

Andrew Kile

3

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28 July 2017

Jessica Severin

4

1 reference

28 July 2017

Dan Forrest

5

1 reference

28 July 2017

Rod Runnheim

6

1 reference

28 July 2017

Chris Churas

7

1 reference

28 July 2017

Jason W Hickman

8

1 reference

28 July 2017

Chris Mackenzie

9

1 reference

28 July 2017

Madhusudan Choudhary

10

1 reference

28 July 2017

Timothy Donohue

11

1 reference

28 July 2017

Samuel Kaplan

12

1 reference

28 July 2017

David C Schwartz

13

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28 July 2017

publication date

1 September 2003

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28 July 2017

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28 July 2017

volume

13

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28 July 2017

issue

9

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28 July 2017

page(s)

2142-2151

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The home stretch, a first analysis of the nearly completed genome of Rhodobacter sphaeroides 2.4.1.

28 July 2017

cites work

1 reference

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A whole-genome shotgun optical map of Yersinia pestis strain KIM

21 June 2018

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Shotgun optical maps of the whole Escherichia coli O157:H7 genome

21 June 2018

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Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

21 June 2018

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A shotgun optical map of the entire Plasmodium falciparum genome

21 June 2018

1 reference

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Whole-genome shotgun optical mapping of Deinococcus radiodurans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Optical mapping and its potential for large-scale sequencing projects

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Optical mapping of Plasmodium falciparum chromosome 2

21 June 2018

1 reference

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Consed: a graphical tool for sequence finishing

21 June 2018

1 reference

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High-resolution restriction maps of bacterial artificial chromosomes constructed by optical mapping

21 June 2018

1 reference

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Function of a glutathione-dependent formaldehyde dehydrogenase in Rhodobacter sphaeroides formaldehyde oxidation and assimilation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Characterization of genes encoding dimethyl sulfoxide reductase of Rhodobacter sphaeroides 2.4.1T: an essential metabolic gene function encoded on chromosome II

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

High throughput fingerprint analysis of large-insert clones

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

FPC: a system for building contigs from restriction fingerprinted clones.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Low-resolution sequencing of Rhodobacter sphaeroides 2.4.1T: chromosome II is a true chromosome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Genomics via optical mapping. II: Ordered restriction maps

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Expression of the Rhodobacter sphaeroides hemA and hemT genes, encoding two 5-aminolevulinic acid synthase isozymes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Multiple chromosomes in bacteria: structure and function of chromosome II of Rhodobacter sphaeroides 2.4.1T.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

A sensory transducer homologous to the mammalian peripheral-type benzodiazepine receptor regulates photosynthetic membrane complex formation in Rhodobacter sphaeroides 2.4.1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

21 June 2018

Mitochondrial origins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Physical and genetic mapping of the Rhodobacter sphaeroides 2.4.1 genome: presence of two unique circular chromosomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Physical and genetic mapping of the Rhodobacter sphaeroides 2.4.1 genome: genome size, fragment identification, and gene localization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Chromosome transfer in Rhodobacter sphaeroides: Hfr formation and genetic evidence for two unique circular chromosomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Identification of intrinsic high-level resistance to rare-earth oxides and oxyanions in members of the class Proteobacteria: characterization of tellurite, selenite, and rhodium sesquioxide reduction in Rhodobacter sphaeroides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Intracytoplasmic membrane synthesis in synchronous cell populations of Rhodopseudomonas sphaeroides. Fate of “old” and “new” membrane

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403714

Optical mapping of lambda bacteriophage clones using restriction endonucleases

21 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12952882

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Optical mapping: an approach for fine mapping

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12952882

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.1128803

1 reference

28 July 2017

1 reference

28 July 2017

1 reference