De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers (Q33732257)

29 July 2017

De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers (English)

1 reference

Luiz Gonzaga Paula de Almeida

29 July 2017

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1 reference

Hevea brasiliensis

1 reference

1 reference

7

Luiz Gonzaga Paula de Almeida

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Dominique Garcia

Dominique Garcia

16

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Daniel Guariz Pinheiro

Daniel Guariz Pinheiro

3

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Antonio Figueira

Antonio Figueira

11

0 references

Luiz L Coutinho

Luiz Lehmann Coutinho

15

0 references

Marisa Fabiana Nicolás

6

Marisa Fabiana Nicolás

1 reference

29 July 2017

Ana Tereza R Vasconcelos

1 reference

https://orcid.org/0000-0002-4632-2086

author name string

Leonardo Rippel Salgado

1

1 reference

29 July 2017

Daniela Martins Koop

2

1 reference

29 July 2017

Ronan Rivallan

4

1 reference

29 July 2017

Vincent Le Guen

5

1 reference

29 July 2017

Viviani Ribeiro Rocha

8

1 reference

29 July 2017

Milena Magalhães

9

1 reference

29 July 2017

Alexandra Lehmkuhl Gerber

10

1 reference

29 July 2017

Júlio Cézar de Mattos Cascardo

12

1 reference

29 July 2017

AnaTereza Ribeiro de Vasconcelos

13

1 reference

29 July 2017

Wilson Araújo Silva

14

1 reference

29 July 2017

language of work or name

English

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publication date

26 March 2014

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29 July 2017

1 reference

29 July 2017

15

1 reference

29 July 2017

236

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Creative Commons Attribution 2.0 Generic

29 July 2017

start time

26 March 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-236

0 references

cites work

Hyperdominance in the Amazonian tree flora

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

QTL mapping of growth-related traits in a full-sib family of rubber tree (Hevea brasiliensis) evaluated in a sub-tropical climate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

Microsatellite marker development for the rubber tree (Hevea brasiliensis): characterization and cross-amplification in wild Hevea species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

Transcriptome sequencing of Hevea brasiliensis for development of microsatellite markers and construction of a genetic linkage map

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

REVIGO summarizes and visualizes long lists of gene ontology terms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

Development, characterization, and cross-species/genera transferability of SSR markers for rubber tree (Hevea brasiliensis).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

Optimization of de novo transcriptome assembly from next-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

Next generation transcriptomes for next generation genomes using est2assembly.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

Fast and accurate short read alignment with Burrows-Wheeler transform

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

RNA-Seq: a revolutionary tool for transcriptomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

SNP discovery via 454 transcriptome sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

Insights into rubber biosynthesis from transcriptome analysis of Hevea brasiliensis latex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

KAAS: an automatic genome annotation and pathway reconstruction server

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

The molecular ecologist's guide to expressed sequence tags

21 June 2018

1 reference

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WEGO: a web tool for plotting GO annotations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

Somaclonal variation in micropropagated oil palm. Characterization of two novel genes with enhanced expression in epigenetically abnormal cell lines and in response to auxin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

Bioconductor: open software development for computational biology and bioinformatics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

PlantGDB, plant genome database and analysis tools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

InterProScan--an integration platform for the signature-recognition methods in InterPro

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

EMBOSS: the European Molecular Biology Open Software Suite

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

Alternative sources of natural rubber

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

The neighbor-joining method: a new method for reconstructing phylogenetic trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

A Possible Role of Intracellular Isoelectric Focusing in the Evolution of Eukaryotic Cells and Multicellular Organisms

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4051172

Evolution of the isoelectric point of mammalian proteins as a consequence of indels and adaptive evolution

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24670056

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Single nucleotide polymorphism marker development in the rubber tree, Hevea brasiliensis (Euphorbiaceae)

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24670056

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-15-236

1 reference

Dimensions Publication ID

29 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-236

9 September 2019

1 reference

29 July 2017

1 reference