Pathway of ATP utilization and duplex rRNA unwinding by the DEAD-box helicase, DbpA. (Q33733058)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

title

Pathway of ATP utilization and duplex rRNA unwinding by the DEAD-box helicase, DbpA (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

Correction for Henn et al., Pathway of ATP utilization and duplex rRNA unwinding by the DEAD-box helicase, DbpA

18 January 2020

corrigendum / erratum

0 references

author

Arnon Henn

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

author name string

Wenxiang Cao

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Nicholas Licciardello

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Sara E Heitkamp

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

David D Hackney

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Enrique M De La Cruz

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

language of work or name

English

0 references

publication date

16 February 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

18 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

volume

107

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

issue

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

page(s)

4046-4050

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunit

18 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

FitSpace explorer: an algorithm to evaluate multidimensional parameter space in fitting kinetic data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

Global kinetic explorer: a new computer program for dynamic simulation and fitting of kinetic data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

DEAD-box proteins can completely separate an RNA duplex using a single ATP.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

Translocation and unwinding mechanisms of RNA and DNA helicases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

Non-hexameric DNA helicases and translocases: mechanisms and regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

DEAD-box proteins unwind duplexes by local strand separation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

The DEAD-box protein family of RNA helicases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

Hydrodynamic characterization of the DEAD-box RNA helicase DbpA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

Magnesium, ADP, and actin binding linkage of myosin V: evidence for multiple myosin V-ADP and actomyosin V-ADP states

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

Visualization of unwinding activity of duplex RNA by DbpA, a DEAD box helicase, at single-molecule resolution by atomic force microscopy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

The "DEAD box" protein DbpA interacts specifically with the peptidyltransferase center in 23S rRNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

Resolution of multiphasic reactions by the combination of fluorescence total-intensity and anisotropy stopped-flow kinetic experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840157

An eIF-4A-like protein is a suppressor of an Escherichia coli mutant defective in 50S ribosomal subunit assembly

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0913081107

Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0913081107

Equilibrium and kinetic analysis of nucleotide binding to the DEAD-box RNA helicase DbpA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0913081107

Caspase activity during cell stasis: avoidance of apoptosis in an invertebrate extremophile, Artemia franciscana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0913081107

Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM--a flexible, portable system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0913081107

Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20160110

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0913081107

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20160110%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference