Aging effects on DNA methylation modules in human brain and blood tissue (Q33741734)

29 July 2017

Aging effects on DNA methylation modules in human brain and blood tissue (English)

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29 July 2017

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Marco P M Boks

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29 July 2017

Leonard H van den Berg

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object named as

Leonard H van den Berg

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29 July 2017

4

René S Kahn

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29 July 2017

Steve Horvath

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29 July 2017

Yafeng Zhang

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29 July 2017

Peter Langfelder

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29 July 2017

Kristel van Eijk

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29 July 2017

Roel A Ophoff

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29 July 2017

3 October 2012

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13

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R97

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10

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describes a project that uses

29 July 2017

WGCNA

object named as

WGCNA R package

WGCNA

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

WGCNA

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exact match

https://scigraph.springernature.com/pub.10.1186/gb-2012-13-10-r97

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cites work

Comparison of co-expression measures: mutual information, correlation, and model based indices

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Epigenome-wide scans identify differentially methylated regions for age and age-related phenotypes in a healthy ageing population

21 June 2018

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Dynamics of DNA methylation in aging and Alzheimer's disease

21 June 2018

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DNA methylation signatures in development and aging of the human prefrontal cortex

21 June 2018

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Age-associated DNA methylation in pediatric populations

21 June 2018

1 reference

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Comparing statistical methods for constructing large scale gene networks

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Replicative senescence of mesenchymal stem cells causes DNA-methylation changes which correlate with repressive histone marks

21 June 2018

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Strategies for aggregating gene expression data: the collapseRows R function

21 June 2018

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Is my network module preserved and reproducible?

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Is human blood a good surrogate for brain tissue in transcriptional studies?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Epigenetic methodologies for behavioral scientists

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Epigenetic regulation of aging.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

The Janus face of DNA methylation in aging

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer.

21 June 2018

1 reference

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Dynamic DNA methylation programs persistent adverse effects of early-life stress

21 June 2018

1 reference

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DNA methylation pattern changes upon long-term culture and aging of human mesenchymal stromal cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

The relationship of DNA methylation with age, gender and genotype in twins and healthy controls

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

A genome-wide association study identifies a new ovarian cancer susceptibility locus on 9p22.2.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

WGCNA: an R package for weighted correlation network analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Geometric interpretation of gene coexpression network analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Intra-individual change over time in DNA methylation with familial clustering

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Statistical issues in the analysis of Illumina data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Eigengene networks for studying the relationships between co-expression modules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

DNA methylation in the human cerebral cortex is dynamically regulated throughout the life span and involves differentiated neurons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Epigenetics and aging: the targets and the marks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Cross-talk between aging and cancer: the epigenetic language

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Biological impacts and context of network theory

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Gene network interconnectedness and the generalized topological overlap measure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Computational inference of neural information flow networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Analysis of oncogenic signaling networks in glioblastoma identifies ASPM as a molecular target

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Inflammatory changes parallel the early stages of Alzheimer disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Is aging part of Alzheimer's disease, or is Alzheimer's disease part of aging?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

A general framework for weighted gene co-expression network analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Control of developmental regulators by Polycomb in human embryonic stem cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Polycomb complexes repress developmental regulators in murine embryonic stem cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Identifying biological themes within lists of genes with EASE

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Statistical significance for genomewide studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Hierarchical organization of modularity in metabolic networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Do changes in chromosomes cause aging?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Sequence overlap between autosomal and sex-linked probes on the Illumina HumanMethylation27 microarray.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2012-13-10-R97

Network neighborhood analysis with the multi-node topological overlap measure

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2012-13-10-R97

[Nucleotide composition of DNA and RNA from somatic tissues of humpback and its changes during spawning]

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

Combining probability from independent tests: the weighted Z-method is superior to Fisher's approach

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053733

30 October 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2012-13-10-R97

DNA methylation decreases in aging but not in immortal cells

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23034122

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2012-13-10-R97

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Dimensions Publication ID

29 July 2017

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29 July 2017

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