DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation (Q33760181)

29 July 2017

title

DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation (English)

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29 July 2017

6

Alan R Bishop

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29 July 2017

1

Boian S Alexandrov

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29 July 2017

4

Ludmil B Alexandrov

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29 July 2017

7

Kim Ø Rasmussen

1 reference

29 July 2017

Vladimir Gelev

2

1 reference

29 July 2017

Sang Wook Yoo

series ordinal

3

1 reference

29 July 2017

Yayoi Fukuyo

series ordinal

5

1 reference

29 July 2017

Anny Usheva

series ordinal

8

1 reference

29 July 2017

language of work or name

English

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publication date

17 December 2009

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29 July 2017

published in

Nucleic Acids Research

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29 July 2017

volume

38

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29 July 2017

issue

6

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29 July 2017

page(s)

1790-1795

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DNA Breathing Dynamics in the Presence of a Terahertz Field.

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

Toward a detailed description of the thermally induced dynamics of the core promoter

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

A nonlinear dynamic model of DNA with a sequence-dependent stacking term

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

Nature and magnitude of aromatic stacking of nucleic acid bases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

The RNA polymerase II core promoter - the gateway to transcription.

21 June 2018

1 reference

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Rational design of a super core promoter that enhances gene expression.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

Genome-wide analysis of mammalian promoter architecture and evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

DNA dynamically directs its own transcription initiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

Synergistic activation of the TATA-less mouse thymidylate synthase promoter by the Ets transcription factor GABP and Sp1.

21 June 2018

1 reference

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An initiation element in the yeast CUP1 promoter is recognized by RNA polymerase II in the absence of TATA box-binding protein if the DNA is negatively supercoiled

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

Peeling by binding or twisting by cranking: models for promoter opening and transcription initiation by RNA polymerase II.

21 June 2018

1 reference

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Structural basis for initiation of transcription from an RNA polymerase-promoter complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

YY1 transcriptional initiator: protein interactions and association with a DNA site containing unpaired strands

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

DNA topology and a minimal set of basal factors for transcription by RNA polymerase II

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

Lack of an initiator element is responsible for multiple transcriptional initiation sites of the TATA-less mouse thymidylate synthase promoter

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

TATA-binding protein-independent initiation: YY1, TFIIB, and RNA polymerase II direct basal transcription on supercoiled template DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

Local modes in a DNA polymer with hydrogen bond defect

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

Multiple factors required for accurate initiation of transcription by purified RNA polymerase II.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

Pre-melting dynamics of DNA and its relation to specific functions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

Far-infrared vibrational modes of DNA components studied by terahertz time-domain spectroscopy

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847213

High base pair opening rates in tracts of GC base pairs

30 October 2018

1 reference

12 December 2020

Statistical mechanics of a nonlinear model for DNA denaturation

1 reference

12 December 2020

Probing the mechanical unzipping of DNA

1 reference

12 December 2020

Bubble statistics and dynamics in double-stranded DNA

1 reference

12 December 2020

Bubble nucleation and cooperativity in DNA melting

1 reference

12 December 2020

Physicochemical studies on polydeoxyribonucleotides containing defined repeating nucleotide sequences

1 reference

12 December 2020

Entropy-driven DNA denaturation

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKP1084

1 reference

29 July 2017

1 reference

29 July 2017

1 reference