Reconstructing embryonic development (Q33765699)

29 July 2017

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title

Reconstructing embryonic development (English)

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29 July 2017

Philipp J Keller

2

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Khaled Khairy

series ordinal

1

object named as

Khaled Khairy

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29 July 2017

24 January 2011

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29 July 2017

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29 July 2017

49

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29 July 2017

488-513

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29 July 2017

7

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Rapid automated three-dimensional tracing of neurons from confocal image stacks

29 July 2017

1 reference

Automated cell lineage construction: a rapid method to analyze clonal development established with murine neural progenitor cells.

21 January 2018

1 reference

Whole cell segmentation in solid tissue sections.

21 January 2018

1 reference

Automated cell lineage tracing in Caenorhabditis elegans

21 January 2018

1 reference

Nlcam modulates midline convergence during anterior neural plate morphogenesis

21 January 2018

1 reference

Design and quantitative resolution measurements of an optical virtual sectioning three-dimensional imaging technique for biomedical specimens, featuring two-micrometer slicing resolution.

21 January 2018

1 reference

Methods toward in vivo measurement of zebrafish epithelial and deep cell proliferation

21 January 2018

1 reference

Cell morphodynamics visualization from images of zebrafish embryogenesis.

21 January 2018

1 reference

A Computational Approach to Edge Detection

21 January 2018

1 reference

21 January 2018

Geodesic Active Contours

1 reference

Active contours without edges

21 January 2018

1 reference

Segmentation of heterogeneous blob objects through voting and level set formulation

21 January 2018

1 reference

Noninvasive harmonics optical microscopy for long-term observation of embryonic nervous system development in vivo.

21 January 2018

1 reference

In vivo developmental biology study using noninvasive multi-harmonic generation microscopy.

21 January 2018

1 reference

Imaging cell signalling and movement in development.

21 January 2018

1 reference

Regulation of cell migration during chick gastrulation

21 January 2018

1 reference

A Monte Carlo approach to rolling leukocyte tracking in vivo

21 January 2018

1 reference

A model-based approach for automated in vitro cell tracking and chemotaxis analyses.

21 January 2018

1 reference

An automatic system for in vitro cell migration studies.

21 January 2018

1 reference

Two-photon laser scanning fluorescence microscopy

21 January 2018

1 reference

Two-photon fluorescence excitation and related techniques in biological microscopy

21 January 2018

1 reference

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

21 January 2018

1 reference

Simultaneous quantification of cell motility and protein-membrane-association using active contours.

21 January 2018

1 reference

Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces.

21 January 2018

1 reference

Three-dimensional laser microsurgery in light-sheet based microscopy (SPIM).

21 January 2018

1 reference

A dynamic fate map of the forebrain shows how vertebrate eyes form and explains two causes of cyclopia.

21 January 2018

1 reference

Fate map and morphogenesis of presumptive neural crest and dorsal neural tube

21 January 2018

1 reference

The influence of cell mechanics, cell-cell interactions, and proliferation on epithelial packing

21 January 2018

1 reference

Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution.

21 January 2018

1 reference

A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm

21 January 2018

1 reference

Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape

21 January 2018

1 reference

Thin laser light sheet microscope for microbial oceanography

21 January 2018

1 reference

Planar cell polarity signalling controls cell division orientation during zebrafish gastrulation

21 January 2018

1 reference

Technicolour transgenics: imaging tools for functional genomics in the mouse

21 January 2018

1 reference

Dynamic in vivo imaging and cell tracking using a histone fluorescent protein fusion in mice

21 January 2018

1 reference

3D-DIASemb: a computer-assisted system for reconstructing and motion analyzing in 4D every cell and nucleus in a developing embryo

21 January 2018

1 reference

CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging.

21 January 2018

1 reference

Deep tissue two-photon microscopy

21 January 2018

1 reference

Single cell lineage and regionalization of cell populations during Medaka neurulation

21 January 2018

1 reference

Fast three-dimensional fluorescence imaging of activity in neural populations by objective-coupled planar illumination microscopy

21 January 2018

1 reference

AIDA: an adaptive image deconvolution algorithm with application to multi-frame and three-dimensional data

21 January 2018

1 reference

In vivo long-term continuous observation of gene expression in zebrafish embryo nerve systems by using harmonic generation microscopy and morphant technology

21 January 2018

1 reference

Optical coherence tomography

21 January 2018

1 reference

On the mechanism of wing size determination in fly development

21 January 2018

1 reference

Even fluorescence excitation by multidirectional selective plane illumination microscopy (mSPIM).

21 January 2018

1 reference

Selective plane illumination microscopy techniques in developmental biology

21 January 2018

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Optical sectioning deep inside live embryos by selective plane illumination microscopy

21 January 2018

1 reference

Robust single-particle tracking in live-cell time-lapse sequences

21 January 2018

1 reference

Probabilistic model-based cell tracking

21 January 2018

1 reference

Snakes: Active contour models

21 January 2018

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Three-dimensional microtubule behavior in Xenopus egg extracts reveals four dynamic states and state-dependent elastic properties

21 January 2018

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Life sciences require the third dimension

21 January 2018

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Three-dimensional preparation and imaging reveal intrinsic microtubule properties

21 January 2018

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Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy

21 January 2018

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Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy

21 January 2018

1 reference

Quantitative in vivo imaging of entire embryos with Digital Scanned Laser Light Sheet Fluorescence Microscopy

21 January 2018

1 reference

Digital scanned laser light sheet fluorescence microscopy

21 January 2018

1 reference

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics

21 January 2018

1 reference

Shapes of Red Blood Cells: Comparison of 3D Confocal Images with the Bilayer-Couple Model.

21 January 2018

1 reference

Spherical harmonics-based parametric deconvolution of 3D surface images using bending energy minimization.

21 January 2018

1 reference

Tensile forces govern germ-layer organization in zebrafish.

21 January 2018

1 reference

3D early embryogenesis image filtering by nonlinear partial differential equations.

21 January 2018

1 reference

In ovo live imaging of avian embryos

21 January 2018

1 reference

Cell dynamics during somite boundary formation revealed by time-lapse analysis

21 January 2018

1 reference

Iterative statistical approach to blind image deconvolution

21 January 2018

1 reference

Live Imaging of Early Developmental Processes in Mammalian Embryos with Optical Coherence Tomography

21 January 2018

1 reference

Segmentation of touching cell nuclei using gradient flow tracking.

21 January 2018

1 reference

3D cell nuclei segmentation based on gradient flow tracking

21 January 2018

1 reference

Cell population tracking and lineage construction with spatiotemporal context

21 January 2018

1 reference

Rapid three-dimensional imaging and analysis of the beating embryonic heart reveals functional changes during development

21 January 2018

1 reference

An automated method for cell detection in zebrafish.

21 January 2018

1 reference

Analysis of cell fate from single-cell gene expression profiles in C. elegans

21 January 2018

1 reference

A 3D digital atlas of C. elegans and its application to single-cell analyses

21 January 2018

1 reference

Automatic channel unmixing for high-throughput quantitative analysis of fluorescence images

21 January 2018

1 reference

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline

21 January 2018

1 reference

Quantification of transcription factor expression from Arabidopsis images.

21 January 2018

1 reference

Parametric blind deconvolution: a robust method for the simultaneous estimation of image and blur

21 January 2018

1 reference

21 January 2018

Theory of Edge Detection

1 reference

Gene expression and development databases for C. elegans

21 January 2018

1 reference

Lighting up developmental mechanisms: how fluorescence imaging heralded a new era.

21 January 2018

1 reference

Fluorescence imaging techniques for studying Drosophila embryo development.

21 January 2018

1 reference

A dynamic finite element surface model for segmentation and tracking in multidimensional medical images with application to cardiac 4D image analysis.

21 January 2018

1 reference

Deformable models in medical image analysis: a survey

21 January 2018

1 reference

Dynamic analyses of Drosophila gastrulation provide insights into collective cell migration

21 January 2018

1 reference

Digitizing life at the level of the cell: high-performance laser-scanning microscopy and image analysis for in toto imaging of development

21 January 2018

1 reference

Imaging in systems biology

21 January 2018

1 reference

Scanning light-sheet microscopy in the whole mouse brain with HiLo background rejection

21 January 2018

1 reference

Visualization-based mapping of language function in the brain.

21 January 2018

1 reference

Level set analysis for leukocyte detection and tracking

21 January 2018

1 reference

Automated analysis of embryonic gene expression with cellular resolution in C. elegans.

21 January 2018

1 reference

The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree.

21 January 2018

1 reference

Live-imaging fluorescent proteins in mouse embryos: multi-dimensional, multi-spectral perspectives

21 January 2018

1 reference

Photomodulatable fluorescent proteins for imaging cell dynamics and cell fate.

21 January 2018

1 reference

Use of KikGR a photoconvertible green-to-red fluorescent protein for cell labeling and lineage analysis in ES cells and mouse embryos

21 January 2018

1 reference

Imaging mouse development with confocal time-lapse microscopy

21 January 2018

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Cellular dynamics in the early mouse embryo: from axis formation to gastrulation

21 January 2018

1 reference

Quantitative approaches in developmental biology.

21 January 2018

1 reference

Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy.

21 January 2018

1 reference

Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations

21 January 2018

1 reference

Spatio-temporal cell cycle phase analysis using level sets and fast marching methods.

21 January 2018

1 reference

A simple scanless two-photon fluorescence microscope using selective plane illumination.

21 January 2018

1 reference

Biology and physics of cell shape changes in development

21 January 2018

1 reference

The third dimension bridges the gap between cell culture and live tissue

21 January 2018

1 reference

Formation of the dorsal marginal zone in Xenopus laevis analyzed by time-lapse microscopic magnetic resonance imaging

21 January 2018

1 reference

Live cell imaging in Drosophila melanogaster

21 January 2018

1 reference

Automatic image analysis for gene expression patterns of fly embryos

21 January 2018

1 reference

Straightening Caenorhabditis elegans images

21 January 2018

1 reference

VANO: a volume-object image annotation system

21 January 2018

1 reference

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

21 January 2018

1 reference

Scale-space and edge detection using anisotropic diffusion

21 January 2018

1 reference

Software for bead-based registration of selective plane illumination microscopy data

21 January 2018

1 reference

Automatic real-time three-dimensional cell tracking by fluorescence microscopy.

21 January 2018

1 reference

Visualization and quantification of vesicle trafficking on a three-dimensional cytoskeleton network in living cells.

21 January 2018

1 reference

Tracking leukocytes in vivo with shape and size constrained active contours

21 January 2018

1 reference

Individual cell migration serves as the driving force for optic vesicle evagination.

21 January 2018

1 reference

Live imaging and morphometric analysis of embryonic development in the ascidian Ciona intestinalis

21 January 2018

1 reference

Region-based PDEs for cells counting and segmentation in 3D+time images of vertebrate early embryogenesis

21 January 2018

1 reference

Artifacts resulting from imaging in scattering media: a theoretical prediction

21 January 2018

1 reference

Digital three-dimensional atlas of quail development using high-resolution MRI.

21 January 2018

1 reference

Segmentation of fluorescence microscopy images for quantitative analysis of cell nuclear architecture.

21 January 2018

1 reference

Subjective surfaces: a method for completing missing boundaries

21 January 2018

1 reference

High-speed imaging of developing heart valves reveals interplay of morphogenesis and function.

21 January 2018

1 reference

Assessing normal embryogenesis in Caenorhabditis elegans using a 4D microscope: variability of development and regional specification

21 January 2018

1 reference

Optical projection tomography as a tool for 3D microscopy and gene expression studies

21 January 2018

1 reference

Mechanical feedback as a possible regulator of tissue growth

21 January 2018

1 reference

Pulsed forces timed by a ratchet-like mechanism drive directed tissue movement during dorsal closure.

21 January 2018

1 reference

Morphometric analysis of lateral ventricles in schizophrenia and healthy controls regarding genetic and disease-specific factors

21 January 2018

1 reference

Higher harmonic generation microscopy for developmental biology

21 January 2018

1 reference

Automated identification of vessel contours in coronary arteriograms by an adaptive tracking algorithm

21 January 2018

1 reference

Quantitative imaging of collective cell migration during Drosophila gastrulation: multiphoton microscopy and computational analysis

21 January 2018

1 reference

Multi-view image fusion improves resolution in three-dimensional microscopy.

21 January 2018

1 reference

A quantitative approach to the study of cell shapes and interactions during early chordate embryogenesis.

21 January 2018

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Profiling by image registration reveals common origin of annelid mushroom bodies and vertebrate pallium

21 January 2018

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Biology by numbers: mathematical modelling in developmental biology.

21 January 2018

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Miniaturization and defocus correction for objective-coupled planar illumination microscopy

21 January 2018

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The chemical basis of morphogenesis

21 January 2018

2 references

21 January 2018

7 January 2021

Imaging mouse embryonic development

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Watersheds in digital spaces: an efficient algorithm based on immersion simulations

21 January 2018

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Visualization of image data from cells to organisms

21 January 2018

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Visual exploration of three-dimensional gene expression using physical views and linked abstract views

21 January 2018

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Medaka--a model organism from the far East

21 January 2018

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Convergence and extension movements during vertebrate gastrulation

21 January 2018

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Quantitative neurite outgrowth measurement based on image segmentation with topological dependence

21 January 2018

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Evolving generalized Voronoi diagrams for accurate cellular image segmentation

21 January 2018

1 reference

A digital image-based method for computational tissue fate mapping during early avian morphogenesis

21 January 2018

1 reference

Cells segmentation from 3-D confocal images of early zebrafish embryogenesis.

21 January 2018

1 reference

Automatic recognition and annotation of gene expression patterns of fly embryos

21 January 2018

1 reference

Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing.

21 January 2018

1 reference

A new point matching algorithm for non-rigid registration

21 January 2018

1 reference

On active contour models and balloons

21 January 2018

1 reference

Building a dynamic fate map.

21 January 2018

1 reference

Uber Sichtbarmachung und Größenbestimmung ultramikoskopischer Teilchen, mit besonderer Anwendung auf Goldrubingläser

21 January 2018

1 reference

Orthogonal-plane fluorescence optical sectioning: three-dimensional imaging of macroscopic biological specimens.

21 January 2018

2 references

21 January 2018

7 January 2021

Spiral Waves of Chemical Activity

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HIF1A signaling selectively supports proliferation of breast cancer in the brain

21 January 2018

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Dynamics of anisotropic tissue growth

21 January 2018

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Parametrization of Closed Surfaces for 3-D Shape Description

21 January 2018

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Automatic tracking of biological cells and compartments using particle filters and active contours

21 January 2018

1 reference

A survey of image registration techniques

21 January 2018

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Active Shape Models-Their Training and Application

21 January 2018

1 reference

Image registration methods: a survey

21 January 2018

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Time-lapse microscopy of brain development.

21 January 2018

1 reference

7 January 2021

Detection of blob objects in microscopic zebrafish images based on gradient vector diffusion

1 reference

7 January 2021

An iterative technique for the rectification of observed distributions

1 reference

7 January 2021

Coupled minimum-cost flow cell tracking.

1 reference

7 January 2021

Image segmentation by histogram thresholding using fuzzy sets

1 reference

7 January 2021

High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy.

1 reference

7 January 2021

Snakes, shapes, and gradient vector flow

1 reference

7 January 2021

Identifiers

DOI

10.1002/DVG.20698

1 reference

29 July 2017

1 reference

PubMed ID

21140407