seqMINER: an integrated ChIP-seq data interpretation platform (Q33777909)

29 July 2017

seqMINER: an integrated ChIP-seq data interpretation platform (English)

1 reference

29 July 2017

Arnaud R Krebs

2

0 references

Irwin Davidson

object named as

Irwin Davidson

6

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László Tora

object named as

Laszlo Tora

7

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Frédéric Plewniak

5

object named as

Frederic Plewniak

1 reference

29 July 2017

Tao Ye

1

1 reference

29 July 2017

Mohamed-Amin Choukrallah

3

1 reference

29 July 2017

Celine Keime

4

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29 July 2017

language of work or name

English

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publication date

21 December 2010

1 reference

29 July 2017

Nucleic Acids Research

1 reference

29 July 2017

39

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29 July 2017

6

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29 July 2017

e35

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

29 July 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

SetDB1 contributes to repression of genes encoding developmental regulators and maintenance of ES cell state

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

CEAS: cis-regulatory element annotation system

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

LookSeq: A browser-based viewer for deep sequencing data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

JBrowse: a next-generation genome browser

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

Comparative study on ChIP-seq data: normalization and binding pattern characterization

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

Histone modifications at human enhancers reflect global cell-type-specific gene expression

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

GPAT: retrieval of genomic annotation from large genomic position datasets.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

An integrated software system for analyzing ChIP-chip and ChIP-seq data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

Model-based analysis of ChIP-Seq (MACS)

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

Combinatorial patterns of histone acetylations and methylations in the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

Genome-wide mapping of in vivo protein-DNA interactions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

Control of developmental regulators by Polycomb in human embryonic stem cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

Polycomb complexes repress developmental regulators in murine embryonic stem cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

Open source clustering software

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

DAVID: Database for Annotation, Visualization, and Integrated Discovery

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

The human genome browser at UCSC

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064796

4 July 2018

Identifiers

DOI

10.1093/NAR/GKQ1287

1 reference

29 July 2017

1 reference

29 July 2017

1 reference