Structural dynamics and conformational equilibria of SERCA regulatory proteins in membranes by solid-state NMR restrained simulations. (Q33803663)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24940774%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

title

Structural dynamics and conformational equilibria of SERCA regulatory proteins in membranes by solid-state NMR restrained simulations (English)

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20 March 2020

2

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20 March 2020

author name string

Alfonso De Simone

series ordinal

1

1 reference

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20 March 2020

Gianluigi Veglia

series ordinal

3

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20 March 2020

language of work or name

English

0 references

publication date

1 June 2014

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20 March 2020

1 reference

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20 March 2020

volume

106

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20 March 2020

issue

12

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20 March 2020

page(s)

2566-2576

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GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

20 March 2020

cites work

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Structural Dynamics and Topology of Phosphorylated Phospholamban Homopentamer Reveal Its Role in the Regulation of Calcium Transport

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Lipid bilayer preparations of membrane proteins for oriented and magic-angle spinning solid-state NMR samples

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Allosteric regulation of SERCA by phosphorylation-mediated conformational shift of phospholamban

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4 July 2018

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4 July 2018

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The sarcolipin-bound calcium pump stabilizes calcium sites exposed to the cytoplasm

4 July 2018

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Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state

4 July 2018

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Structure of the Disulfide Bond Generating Membrane Protein DsbB in the Lipid Bilayer

4 July 2018

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Membrane sculpting by F-BAR domains studied by molecular dynamics simulations

4 July 2018

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Sarco(endo)plasmic reticulum calcium ATPase (SERCA) inhibition by sarcolipin is encoded in its luminal tail

4 July 2018

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Sarcolipin protein interaction with sarco(endo)plasmic reticulum Ca2+ ATPase (SERCA) is distinct from phospholamban protein, and only sarcolipin can promote uncoupling of the SERCA pump.

4 July 2018

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Structure of the chemokine receptor CXCR1 in phospholipid bilayers

4 July 2018

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Tuning the structural coupling between the transmembrane and cytoplasmic domains of phospholamban to control sarcoplasmic reticulum Ca(2+)-ATPase (SERCA) function

4 July 2018

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Sarcolipin is a newly identified regulator of muscle-based thermogenesis in mammals.

4 July 2018

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The magic of bicelles lights up membrane protein structure

4 July 2018

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M2 proton channel structural validation from full-length protein samples in synthetic bilayers and E. coli membranes

4 July 2018

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Determination of 15N chemical shift anisotropy from a membrane-bound protein by NMR spectroscopy

4 July 2018

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Magic angle spinning and oriented sample solid-state NMR structural restraints combine for influenza a M2 protein functional insights.

4 July 2018

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Structure of an intermediate state in protein folding and aggregation

4 July 2018

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Intrinsic disorder modulates protein self-assembly and aggregation

4 July 2018

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Interpreting protein structural dynamics from NMR chemical shifts

4 July 2018

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Derivation and systematic validation of a refined all-atom force field for phosphatidylcholine lipids

4 July 2018

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Energy landscape of the prion protein helix 1 probed by metadynamics and NMR.

4 July 2018

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Structure Determination of a Membrane Protein in Proteoliposomes

4 July 2018

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On the combined analysis of ²H and ¹⁵N/¹H solid-state NMR data for determination of transmembrane peptide orientation and dynamics

4 July 2018

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4 July 2018

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Experimental free energy surfaces reveal the mechanisms of maintenance of protein solubility

4 July 2018

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4 July 2018

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4 July 2018

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An ensemble dynamics approach to decipher solid-state NMR observables of membrane proteins

4 July 2018

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Probing ground and excited states of phospholamban in model and native lipid membranes by magic angle spinning NMR spectroscopy.

4 July 2018

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Structural topology of phospholamban pentamer in lipid bilayers by a hybrid solution and solid-state NMR method

4 July 2018

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Lipid-mediated folding/unfolding of phospholamban as a regulatory mechanism for the sarcoplasmic reticulum Ca2+-ATPase

4 July 2018

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Improved side-chain torsion potentials for the Amber ff99SB protein force field

4 July 2018

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g_membed: Efficient insertion of a membrane protein into an equilibrated lipid bilayer with minimal perturbation

4 July 2018

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Site-specific backbone amide (15)N chemical shift anisotropy tensors in a small protein from liquid crystal and cross-correlated relaxation measurements

4 July 2018

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A refinement protocol to determine structure, topology, and depth of insertion of membrane proteins using hybrid solution and solid-state NMR restraints.

4 July 2018

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Structure and topology of monomeric phospholamban in lipid membranes determined by a hybrid solution and solid-state NMR approach

4 July 2018

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On the function of pentameric phospholamban: ion channel or storage form?

4 July 2018

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Tilt and azimuthal angles of a transmembrane peptide: a comparison between molecular dynamics calculations and solid-state NMR data of sarcolipin in lipid membranes.

4 July 2018

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Phosphomimetic mutations increase phospholamban oligomerization and alter the structure of its regulatory complex

4 July 2018

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Transmembrane helix uniformity examined by spectral mapping of torsion angles.

4 July 2018

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Are current molecular dynamics force fields too helical?

4 July 2018

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How Does an Amide-N Chemical Shift Tensor Vary in Peptides?

4 July 2018

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4 July 2018

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Structural and dynamic basis of phospholamban and sarcolipin inhibition of Ca(2+)-ATPase

4 July 2018

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Förster transfer recovery reveals that phospholamban exchanges slowly from pentamers but rapidly from the SERCA regulatory complex

4 July 2018

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Spectroscopic validation of the pentameric structure of phospholamban

4 July 2018

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Canonical sampling through velocity rescaling

4 July 2018

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Comparison of multiple Amber force fields and development of improved protein backbone parameters

4 July 2018

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Three-dimensional structure of the transmembrane domain of Vpu from HIV-1 in aligned phospholipid bicelles

4 July 2018

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Phosphorylation-dependent conformational switch in spin-labeled phospholamban bound to SERCA.

4 July 2018

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Towards complete descriptions of the free-energy landscapes of proteins

4 July 2018

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Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew

4 July 2018

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Solid-state NMR spectroscopy of aligned lipid bilayers at low temperatures

4 July 2018

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NMR solution structure and topological orientation of monomeric phospholamban in dodecylphosphocholine micelles

4 July 2018

1 reference

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Simultaneous assignment and structure determination of a membrane protein from NMR orientational restraints

4 July 2018

1 reference

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The Xplor-NIH NMR molecular structure determination package

4 July 2018

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Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy

4 July 2018

1 reference

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Uniformity, ideality, and hydrogen bonds in transmembrane alpha-helices

4 July 2018

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Escaping free-energy minima

4 July 2018

1 reference

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Molecular dynamics simulations of biomolecules

4 July 2018

1 reference

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Dipolar waves as NMR maps of protein structure

4 July 2018

1 reference

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Atomic refinement using orientational restraints from solid-state NMR.

4 July 2018

1 reference

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Direct spectroscopic detection of molecular dynamics and interactions of the calcium pump and phospholamban.

4 July 2018

1 reference

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Sarcolipin regulates the activity of SERCA1, the fast-twitch skeletal muscle sarcoplasmic reticulum Ca2+-ATPase

4 July 2018

1 reference

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High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints

4 July 2018

1 reference

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The binding site of sodium in the gramicidin A channel: comparison of molecular dynamics with solid-state NMR data

4 July 2018

1 reference

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Phospholamban phosphorylation in intact ventricles. Phosphorylation of serine 16 and threonine 17 in response to beta-adrenergic stimulation

4 July 2018

1 reference

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Conformational dynamics of a seven transmembrane helical protein Anabaena Sensory Rhodopsin probed by solid-state NMR

4 July 2018

1 reference

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Role of conformational sampling of Ser16 and Thr17-phosphorylated phospholamban in interactions with SERCA.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070166

Orientational and motional narrowing of solid-state NMR lineshapes of uniaxially aligned membrane proteins

30 October 2018

1 reference

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Probing excited states and activation energy for the integral membrane protein phospholamban by NMR CPMG relaxation dispersion experiments

30 October 2018

1 reference

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Toward an accurate determination of free energy landscapes in solution states of proteins.

30 October 2018

1 reference

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Controlling the inhibition of the sarcoplasmic Ca2+-ATPase by tuning phospholamban structural dynamics.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070166

Defining the intramembrane binding mechanism of sarcolipin to calcium ATPase using solution NMR spectroscopy

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070166

Intensity and mosaic spread analysis from PISEMA tensors in solid-state NMR.

30 October 2018

1 reference

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Theoretical Analysis of Residual Dipolar Coupling Patterns in Regular Secondary Structures of Proteins

30 October 2018

1 reference

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Determination of multiple torsion-angle constraints in U-(13)C,(15)N-labeled peptides: 3D (1)H-(15)N-(13)C-(1)H dipolar chemical shift NMR spectroscopy in rotating solids

30 October 2018

1 reference

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1H-1H MAS correlation spectroscopy and distance measurements in a deuterated peptide.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070166

Multidimensional oriented solid-state NMR experiments enable the sequential assignment of uniformly 15N labeled integral membrane proteins in magnetically aligned lipid bilayers

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070166

Structural characterization of a misfolded intermediate populated during the folding process of a PDZ domain

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070166

Biomolecular simulations of membranes: Physical properties from different force fields

30 October 2018

1 reference

12 December 2020

Phosphorylation-induced structural change in phospholamban and its mutants, detected by intrinsic fluorescence

1 reference

12 December 2020

Effects of Ser16 phosphorylation on the allosteric transitions of phospholamban/Ca(2+)-ATPase complex

1 reference

12 December 2020

Depolymerization of phospholamban in the presence of calcium pump: a fluorescence energy transfer study

1 reference

12 December 2020

Mapping the population of protein conformational energy sub-states from NMR dipolar couplings

1 reference

12 December 2020

Assessing the effects of time and spatial averaging in 15N chemical shift/15N-1H dipolar correlation solid state NMR experiments

1 reference

12 December 2020

10.1016/J.BPJ.2014.03.026

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24940774%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24940774%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

PubMed publication ID

24940774

1 reference