A novel SNP analysis method to detect copy number alterations with an unbiased reference signal directly from tumor samples (Q33804466)

29 July 2017

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title

A novel SNP analysis method to detect copy number alterations with an unbiased reference signal directly from tumor samples (English)

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29 July 2017

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Alex Lisovich

1

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29 July 2017

Uma R Chandran

2

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29 July 2017

Maureen A Lyons-Weiler

3

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29 July 2017

William A LaFramboise

4

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29 July 2017

Ashley R Brown

5

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29 July 2017

Regina I Jakacki

6

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29 July 2017

Ian F Pollack

7

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29 July 2017

Robert W Sobol

8

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29 July 2017

publication date

26 January 2011

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29 July 2017

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29 July 2017

volume

4

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29 July 2017

page(s)

14

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CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics

29 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

CNV discovery using SNP genotyping arrays.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

Exploratory analysis of the copy number alterations in glioblastoma multiforme

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

A fast and flexible method for the segmentation of aCGH data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

Optimization of the Affymetrix GeneChip Mapping 10K 2.0 Assay for routine clinical use on formalin-fixed paraffin-embedded tissues

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

Sparse representation and Bayesian detection of genome copy number alterations from microarray data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of affymetrix single-nucleotide-polymorphism genotyping microarrays

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

A faster circular binary segmentation algorithm for the analysis of array CGH data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041647

A fast thresholded landweber algorithm for wavelet-regularized multidimensional deconvolution.

4 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1755-8794-4-14

A fast multilevel algorithm for wavelet-regularized image restoration

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1755-8794-4-14

21 January 2018

Identifiers

DOI

10.1186/1755-8794-4-14

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Dimensions Publication ID

29 July 2017

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29 July 2017

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