Inbred Strain Variant Database (ISVdb): A Repository for Probabilistically Informed Sequence Differences Among the Collaborative Cross Strains and Their Founders (Q33807591)

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English	Inbred Strain Variant Database (ISVdb): A Repository for Probabilistically Informed Sequence Differences Among the Collaborative Cross Strains and Their Founders	scientific article

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22 March 2020

Inbred Strain Variant Database (ISVdb): A Repository for Probabilistically Informed Sequence Differences Among the Collaborative Cross Strains and Their Founders (English)

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22 March 2020

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22 March 2020

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22 March 2020

Lisa M Tarantino

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22 March 2020

Fernando Pardo-Manuel de Villena

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22 March 2020

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22 March 2020

author name string

Daniel Oreper

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29 July 2017

Yanwei Cai

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29 July 2017

Lisa M Tarantino

3

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Europe PubMed Central

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29 July 2017

Fernando Pardo-Manuel de Villena

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29 July 2017

William Valdar

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29 July 2017

publication date

7 June 2017

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22 March 2020

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22 March 2020

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22 March 2020

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22 March 2020

1623-1630

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22 March 2020

Oas1b-dependent Immune Transcriptional Profiles of West Nile Virus Infection in the Collaborative Cross.

1 reference

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28 July 2018

Genomes of the Mouse Collaborative Cross

1 reference

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The Mouse Universal Genotyping Array: From Substrains to Subspecies

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28 July 2018

Informatics resources for the Collaborative Cross and related mouse populations

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Host genetic diversity enables Ebola hemorrhagic fever pathogenesis and resistance

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28 July 2018

Quantitative trait locus mapping methods for diversity outbred mice

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28 July 2018

Bayesian modeling of haplotype effects in multiparent populations

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28 July 2018

A new approach for efficient genotype imputation using information from relatives

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Using the emerging Collaborative Cross to probe the immune system

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Modeling host genetic regulation of influenza pathogenesis in the collaborative cross

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28 July 2018

Resolving the polymorphism-in-probe problem is critical for correct interpretation of expression QTL studies

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28 July 2018

Status and access to the Collaborative Cross population.

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A phasing and imputation method for pedigreed populations that results in a single-stage genomic evaluation

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Mouse genomic variation and its effect on phenotypes and gene regulation

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The variant call format and VCFtools

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28 July 2018

Genetic analysis of complex traits in the emerging Collaborative Cross

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28 July 2018

Genomic evaluations with many more genotypes

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28 July 2018

A comparison of approaches to account for uncertainty in analysis of imputed genotypes

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MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes

1 reference

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28 July 2018

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

1 reference

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28 July 2018

Efficient genome ancestry inference in complex pedigrees with inbreeding

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28 July 2018

Genotype imputation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies

1 reference

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A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals

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28 July 2018

A new multipoint method for genome-wide association studies by imputation of genotypes

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28 July 2018

A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase

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A method for fine mapping quantitative trait loci in outbred animal stocks

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HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes.

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Allelic Variation in the Toll-Like Receptor Adaptor Protein Ticam2 Contributes to SARS-Coronavirus Pathogenesis in Mice.

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30 October 2018

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Reconstruction of Genome Ancestry Blocks in Multiparental Populations.

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Whole-genome QTL analysis for MAGIC.

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Properties and power of the Drosophila Synthetic Population Resource for the routine dissection of complex traits.

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Identifiers

10.1534/G3.117.041491

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22 March 2020

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22 March 2020

PubMed publication ID

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28592645%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

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