GC content around splice sites affects splicing through pre-mRNA secondary structures (Q33807911)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21281513%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

title

GC content around splice sites affects splicing through pre-mRNA secondary structures (English)

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21 January 2020

1

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21 January 2020

C.-C. Jay Kuo

series ordinal

2

1 reference

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21 January 2020

author name string

Liang Chen

series ordinal

3

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21 January 2020

language of work or name

English

0 references

publication date

31 January 2011

1 reference

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21 January 2020

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21 January 2020

volume

12

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21 January 2020

page(s)

90

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Genome-wide measurement of RNA secondary structure in yeast

21 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Deciphering the splicing code

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

mRNA secondary structures fold sequentially but exchange rapidly in vivo

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Role of RNA structure in regulating pre-mRNA splicing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Modulation of alternative splicing by long-range RNA structures in Drosophila

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Conserved RNA secondary structures promote alternative splicing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Splicing regulation: from a parts list of regulatory elements to an integrated splicing code

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Pre-mRNA secondary structures influence exon recognition.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Variations on RNA folding and alignment: lessons from Benasque.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Inference of splicing regulatory activities by sequence neighborhood analysis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Memory efficient folding algorithms for circular RNA secondary structures

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Mutually exclusive splicing of the insect Dscam pre-mRNA directed by competing intronic RNA secondary structures

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Influence of RNA secondary structure on the pre-mRNA splicing process

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Pre-mRNA splicing: awash in a sea of proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Pre-mRNA splicing and human disease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Promoter proximal splice sites enhance transcription

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

A secondary structure that contains the 5' and 3' splice sites suppresses splicing of duck hepatitis B virus pregenomic RNA.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Comprehensive proteomic analysis of the human spliceosome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Listening to silence and understanding nonsense: exonic mutations that affect splicing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Pre-mRNA secondary structure prediction aids splice site prediction.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Conserved stem-loop structures in the HIV-1 RNA region containing the A3 3' splice site and its cis-regulatory element: possible involvement in RNA splicing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Yeast pre-mRNA splicing requires a minimum distance between the 5' splice site and the internal branch acceptor site

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

RNA secondary structure repression of a muscle-specific exon in HeLa cell nuclear extracts.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041747

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome

4 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-90

Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-90

Influence of secondary structure on recovery from pauses during early stages of RNA transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-90

Effects of RNA secondary structure on alternative splicing of Pre-mRNA: Is folding limited to a region behind the transcribing RNA polymerase?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-90

First exons and introns--a survey of GC content and gene structure in the human genome

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21281513

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-12-90

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21281513%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

21 January 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-90

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21281513%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

PubMed publication ID

21281513

1 reference