Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire (Q33817604)

29 July 2017

Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire (English)

1 reference

high-throughput sequencing

29 July 2017

1 reference

Terrence L Geiger

6

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ORCID Public Data File 2021

author name string

Phuong Nguyen

1

1 reference

29 July 2017

Jing Ma

2

1 reference

29 July 2017

Deqing Pei

3

1 reference

29 July 2017

Caroline Obert

4

1 reference

29 July 2017

Cheng Cheng

5

1 reference

29 July 2017

language of work or name

English

0 references

publication date

11 February 2011

1 reference

29 July 2017

1 reference

29 July 2017

12

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29 July 2017

106

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-106

29 July 2017

0 references

cites work

A window into third-generation sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

Overlap and effective size of the human CD8+ T cell receptor repertoire

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

Discrete TCR repertoires and CDR3 features distinguish effector and Foxp3+ regulatory T lymphocytes in myelin oligodendrocyte glycoprotein-induced experimental allergic encephalomyelitis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

T cell receptor CDR3 sequence but not recognition characteristics distinguish autoreactive effector and Foxp3(+) regulatory T cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

RNA polymerase fidelity and transcriptional proofreading

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

Dynamic aspects of TCRalpha gene recombination: qualitative and quantitative assessments of the TCRalpha chain repertoire in man and mouse

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

The T-cell receptor repertoire of regulatory T cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

Applications of next-generation sequencing technologies in functional genomics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

Spectratype/immunoscope analysis of the expressed TCR repertoire

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

The molecular basis for public T-cell responses?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

New perspectives for large-scale repertoire analysis of immune receptors

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

Tracking phenotypically and functionally distinct T cell subsets via T cell repertoire diversity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

Naive CD4(+) T cell frequency varies for different epitopes and predicts repertoire diversity and response magnitude.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

How TCRs bind MHCs, peptides, and coreceptors

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

A direct estimate of the human alphabeta T cell receptor diversity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

Base-calling of automated sequencer traces using phred. II. Error probabilities

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045962

Size estimate of the alpha beta TCR repertoire of naive mouse splenocytes

4 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-106

Narrowing of T-cell receptor beta variable repertoire during symptomatic herpesvirus infection in transplant patients.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-106

Rapid CD8+ T cell repertoire focusing and selection of high-affinity clones into memory following primary infection with a persistent human virus: human cytomegalovirus

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-106

Human T-cell memory consists mainly of unexpanded clones.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-106

Junctional biases in the naive TCR repertoire control the CTL response to an immunodominant determinant of HSV-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-106

Non-productive human TCR beta chain genes represent V-D-J diversity before selection upon function: insight into biased usage of TCRBD and TCRBJ genes and diversity of CDR3 region length

21 January 2018

1 reference

12 December 2020

Recognition of the peripheral self by naturally arising CD25+ CD4+ T cell receptors

1 reference

12 December 2020

An RNA polymerase mutant with reduced accuracy of chain elongation

1 reference

12 December 2020

Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-12-106

1 reference

Dimensions Publication ID

29 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-106

9 September 2019

1 reference

29 July 2017

1 reference