Urea facilitates the translocation of single-stranded DNA and RNA through the alpha-hemolysin nanopore (Q33820945)

29 July 2017

Urea facilitates the translocation of single-stranded DNA and RNA through the alpha-hemolysin nanopore (English)

1 reference

29 July 2017

Giovanni Maglia

4

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Hagan Bayley

object named as

Hagan Bayley

5

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author name string

Deanpen Japrung

1

1 reference

29 July 2017

Marsiyana Henricus

2

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29 July 2017

Qiuhong Li

3

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29 July 2017

language of work or name

English

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publication date

1 May 2010

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29 July 2017

8

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inferred from page(s)

published in

Biophysical Journal

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29 July 2017

98

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29 July 2017

9

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29 July 2017

1856-1863

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Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore

29 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Enhanced translocation of single DNA molecules through alpha-hemolysin nanopores by manipulation of internal charge

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

RNA STRAND: the RNA secondary structure and statistical analysis database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Sequence-specific detection of individual DNA polymerase complexes in real time using a nanopore

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

A single-molecule nanopore device detects DNA polymerase activity with single-nucleotide resolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Ionic current blockades from DNA and RNA molecules in the alpha-hemolysin nanopore

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Charge density of divalent metal cations determines RNA stability

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Sequence-dependent gating of an ion channel by DNA hairpin molecules

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Analysis of circular dichroism data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Mfold web server for nucleic acid folding and hybridization prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Mechanisms of tryptophan fluorescence shifts in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Rapid nanopore discrimination between single polynucleotide molecules

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

A functional protein pore with a "retro" transmembrane domain

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

The Ribonuclease P Database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Structure of staphylococcal alpha-hemolysin, a heptameric transmembrane pore

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Characterization of individual polynucleotide molecules using a membrane channel

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Discrimination of single base substitutions in a DNA strand immobilized in a biological nanopore

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Polyelectrolyte and unfolded protein pore entrance depends on the pore geometry

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Urea, but not guanidinium, destabilizes proteins by forming hydrogen bonds to the peptide group.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Urea's action on hydrophobic interactions

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

The potential and challenges of nanopore sequencing

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

The tmRDB and SRPDB resources

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Nanopore unzipping of individual DNA hairpin molecules.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Static and time-resolved fluorescence investigations of tryptophan analogues--a solvent study

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Effect of urea, dimethylurea, and tetramethylurea on the phase behavior of dioleoylphosphatidylethanolamine

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

DNA Strands from Denatured Duplexes are Translocated through Engineered Protein Nanopores at Alkaline pH

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2862201

Flexibility of single-stranded DNA: use of gapped duplex helices to determine the persistence lengths of poly(dT) and poly(dA)

29 October 2018

1 reference

12 December 2020

Viscosity and density of aqueous solutions of urea and guanidine hydrochloride

1 reference

12 December 2020

Urea denaturation of alpha-hemolysin pore inserted in planar lipid bilayer detected by single nanopore recording: loss of structural asymmetry

1 reference

12 December 2020

First passage times of driven DNA hairpin unzipping

1 reference

12 December 2020

Stretching of homopolymeric RNA reveals single-stranded helices and base-stacking

1 reference

12 December 2020

Driven DNA transport into an asymmetric nanometer-scale pore

1 reference

12 December 2020

Liquid structure of the urea-water system studied by dielectric spectroscopy

1 reference

12 December 2020

How Small Polar Molecules Protect Membrane Systems against Osmotic Stress: The Urea−Water−Phospholipid System

1 reference

12 December 2020

The relationship of structure to the effectiveness of denaturing agents for deoxyribonucleic acid

1 reference

12 December 2020

Applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding

1 reference

12 December 2020

Simultaneous multianalyte detection with a nanometer-scale pore

1 reference

12 December 2020

Single protein pores containing molecular adapters at high temperatures

1 reference

12 December 2020

10.1016/J.BPJ.2009.12.4333

Identifiers

DOI

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29 July 2017

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29 July 2017

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