RSpred, a set of Hidden Markov Models to detect and classify the RIFIN and STEVOR proteins of Plasmodium falciparum (Q33824139)

29 July 2017

RSpred, a set of Hidden Markov Models to detect and classify the RIFIN and STEVOR proteins of Plasmodium falciparum (English)

1 reference

29 July 2017

Plasmodium falciparum

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Bengt Persson

4

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Mats Wahlgren

series ordinal

3

object named as

Mats Wahlgren

1 reference

29 July 2017

Nicolas Joannin

1

1 reference

29 July 2017

Yvonne Kallberg

series ordinal

2

1 reference

29 July 2017

language of work or name

English

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publication date

18 February 2011

1 reference

29 July 2017

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29 July 2017

12

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29 July 2017

119

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Creative Commons Attribution 2.0 Generic

29 July 2017

start time

18 February 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-119

0 references

cites work

The pir multigene family of Plasmodium: antigenic variation and beyond

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

The Pfam protein families database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

The Universal Protein Resource (UniProt) in 2010

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Revisiting the Plasmodium falciparum RIFIN family: from comparative genomics to 3D-model prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Common strategies for antigenic variation by bacterial, fungal and protozoan pathogens

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Berkeley PHOG: PhyloFacts orthology group prediction web server

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

The Plasmodium falciparum STEVOR multigene family mediates antigenic variation of the infected erythrocyte

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Diverse expression patterns of subgroups of the rif multigene family during Plasmodium falciparum gametocytogenesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

PlasmoDB: a functional genomic database for malaria parasites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

The genome of the simian and human malaria parasite Plasmodium knowlesi

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Plasmodium falciparum STEVOR proteins are highly expressed in patient isolates and located in the surface membranes of infected red blood cells and the apical tips of merozoites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Recent developments in the MAFFT multiple sequence alignment program

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Sub-grouping and sub-functionalization of the RIFIN multi-copy protein family

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Variant proteins of the Plasmodium falciparum RIFIN family show distinct subcellular localization and developmental expression patterns

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Genome variation and evolution of the malaria parasite Plasmodium falciparum

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

ACT: the Artemis Comparison Tool

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

A host-targeting signal in virulence proteins reveals a secretome in malarial infection

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Targeting malaria virulence and remodeling proteins to the host erythrocyte

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

The genome of model malaria parasites, and comparative genomics.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

BLAST: at the core of a powerful and diverse set of sequence analysis tools

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Molecular aspects of malaria pathogenesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

The Jalview Java alignment editor

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Genome sequence of the human malaria parasite Plasmodium falciparum

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Gene discovery in Plasmodium chabaudi by genome survey sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Artemis: sequence visualization and annotation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Rifins: a second family of clonally variant proteins expressed on the surface of red cells infected with Plasmodium falciparum

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Profile hidden Markov models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Rosetting Plasmodium falciparum-infected erythrocytes express unique strain-specific antigens on their surface

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Improved tools for biological sequence comparison

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Variant surface antigens, virulence genes and the pathogenesis of malaria

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-119

Small, clonally variant antigens expressed on the surface of the Plasmodium falciparum-infected erythrocyte are encoded by the rif gene family and are the target of human immune responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-119

Extense variant gene family repertoire overlap in Western Amazon Plasmodium falciparum isolates

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-119

Absence of erythrocyte sequestration and lack of multicopy gene family expression in Plasmodium falciparum from a splenectomized malaria patient

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-119

The TIGRFAMs database of protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-119

Frequent ectopic recombination of virulence factor genes in telomeric chromosome clusters of P. falciparum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-119

A genome-wide map of diversity in Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-119

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

Preferential transcription of conserved rif genes in two phenotypically distinct Plasmodium falciparum parasite lines.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

varDB: a pathogen-specific sequence database of protein families involved in antigenic variation

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050820

29 October 2018

Identifiers

DOI

10.1186/1471-2164-12-119

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference