Structural analysis of heme proteins: implications for design and prediction (Q33836331)

29 July 2017

Structural analysis of heme proteins: implications for design and prediction (English)

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29 July 2017

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2

Herbert L Bonkovsky

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29 July 2017

Ting Li

1

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29 July 2017

Jun-tao Guo

series ordinal

3

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29 July 2017

language of work or name

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3 March 2011

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29 July 2017

BMC Structural Biology

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29 July 2017

11

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29 July 2017

13

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https://scigraph.springernature.com/pub.10.1186/1472-6807-11-13

29 July 2017

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Role of heme in the unfolding and assembly of myoglobin

4 July 2018

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Identification of a thiol/disulfide redox switch in the human BK channel that controls its affinity for heme and CO

4 July 2018

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Roles of glutamates and metal ions in a rationally designed nitric oxide reductase based on myoglobin

4 July 2018

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The role of dynamic conformational ensembles in biomolecular recognition

4 July 2018

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Product Release Rather than Chelation Determines Metal Specificity for Ferrochelatase

4 July 2018

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4 July 2018

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Design of a novel heme protein with a non-heme globin scaffold

4 July 2018

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4 July 2018

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Heme regulatory motifs in heme oxygenase-2 form a thiol/disulfide redox switch that responds to the cellular redox state.

4 July 2018

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4 July 2018

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The Structural Basis of Gas-Responsive Transcription by the Human Nuclear Hormone Receptor REV-ERBβ

4 July 2018

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The chemistry and biochemistry of heme c: functional bases for covalent attachment

4 July 2018

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Cavities and atomic packing in protein structures and interfaces

4 July 2018

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Structure of myoglobin: A three-dimensional Fourier synthesis at 2 A. resolution

4 July 2018

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Structure of haemoglobin: a three-dimensional Fourier synthesis at 5.5-A. resolution, obtained by X-ray analysis

4 July 2018

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Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms

4 July 2018

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A novel heme-regulatory motif mediates heme-dependent degradation of the circadian factor period 2.

4 July 2018

1 reference

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Nuclear receptors, metabolism, and the circadian clock.

4 July 2018

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Allostery: absence of a change in shape does not imply that allostery is not at play

4 July 2018

1 reference

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Identification of heme as the ligand for the orphan nuclear receptors REV-ERBalpha and REV-ERBbeta

4 July 2018

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Rev-erbalpha, a heme sensor that coordinates metabolic and circadian pathways

4 July 2018

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Development of a heme protein structure-electrochemical function database.

4 July 2018

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Heme induces ubiquitination and degradation of the transcription factor Bach1

4 July 2018

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What is the relationship between the global structures of apo and holo proteins?

4 July 2018

1 reference

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PGH2 degradation pathway catalyzed by GSH-heme complex bound microsomal prostaglandin E2 synthase type 2: the first example of a dual-function enzyme

4 July 2018

1 reference

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Evidence that the heme regulatory motifs in heme oxygenase-2 serve as a thiol/disulfide redox switch regulating heme binding

4 July 2018

1 reference

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Diversity and conservation of interactions for binding heme in b-type heme proteins.

4 July 2018

1 reference

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4 July 2018

The Janus nature of heme

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Towards fully automated structure-based function prediction in structural genomics: a case study

4 July 2018

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4 July 2018

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Crystallographic refinement of ligand complexes

4 July 2018

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Heme is involved in microRNA processing

4 July 2018

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What common structural features and variations of mammalian P450s are known to date?

4 July 2018

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4 July 2018

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Structure of a nonheme globin in environmental stress signaling.

4 July 2018

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Mapping PDB chains to UniProtKB entries.

4 July 2018

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Involvement of heme regulatory motif in heme-mediated ubiquitination and degradation of IRP2.

4 July 2018

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SuperLigands - a database of ligand structures derived from the Protein Data Bank

4 July 2018

1 reference

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Side-chain flexibility in protein-ligand binding: the minimal rotation hypothesis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Intrinsically unstructured proteins and their functions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

FAST: a novel protein structure alignment algorithm.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Automated prediction of protein function and detection of functional sites from structure

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Reciprocal regulation of haem biosynthesis and the circadian clock in mammals

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

WebLogo: A Sequence Logo Generator

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Rev-erbalpha upregulates NF-kappaB-responsive genes in vascular smooth muscle cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

MOLECULAR-GENETIC ANALYSIS OF PLANT CYTOCHROME P450-DEPENDENT MONOOXYGENASES.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

4 July 2018

Heme protein assemblies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Ligand Binding-Induced Conformational Changes in Riboflavin Kinase: Structural Basis for the Ordered Mechanism,

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

PROSPECT II: protein structure prediction program for genome-scale applications.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Haem can bind to and inhibit mammalian calcium-dependent Slo1 BK channels.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

PISCES: a protein sequence culling server

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Identification and functions of usefully disordered proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Hemoprotein Bach1 regulates enhancer availability of heme oxygenase-1 gene

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Structure-function relationships in heme-proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Orphan nuclear hormone receptor Rev-erbalpha regulates the human apolipoprotein CIII promoter

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Heme mediates derepression of Maf recognition element through direct binding to transcription repressor Bach1

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

4 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Cytochrome P450 and the individuality of species

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Regulation by heme of mitochondrial protein transport through a conserved amino acid motif

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Heme binds to a short sequence that serves a regulatory function in diverse proteins.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

SCOP: a structural classification of proteins database for the investigation of sequences and structures

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Kinetics and mechanism of heme-induced refolding of human alpha-globin

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Interior and surface of monomeric proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Basic local alignment search tool

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3059290

Elucidation of the heme binding site of heme-regulated eukaryotic initiation factor 2alpha kinase and the role of the regulatory motif in heme sensing by spectroscopic and catalytic studies of mutant proteins.

4 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-11-13

Side-chain flexibility in proteins upon ligand binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-11-13

Heme proteins--diversity in structural characteristics, function, and folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-11-13

His-tag impact on structure.

21 January 2018

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https://api.crossref.org/works/10.1186%2F1472-6807-11-13

Design and synthesis of multi-haem proteins

21 January 2018

1 reference

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21 January 2018

Identifiers

DOI

10.1186/1472-6807-11-13

1 reference

Dimensions Publication ID

29 July 2017

1011861864

0 references

Fatcat ID

release_qnkxv5cljrg2llczdjpiuyovpq

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/qnkxv5cljrg2llczdjpiuyovpq

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3059290

1 reference

29 July 2017

1 reference