Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines (Q33839446)

29 July 2017

Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines (English)

1 reference

29 July 2017

Drosophila melanogaster

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author

Wen Huang

1

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13 June 2020

Aaron M. Tarone

6

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13 June 2020

Thomas Zichner

8

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13 June 2020

Kyle Chang

14

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13 June 2020

Carl E Hjelmen

19

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Stephen Richards

49

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Bart Deplancke

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Trudy F C Mackay

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13 June 2020

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David Mittelman

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Gareth Highnam

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Stephanie M Rollmann

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13 June 2020

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Robert R H Anholt

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13 June 2020

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Mary Anna Carbone

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13 June 2020

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Donna M Muzny

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13 June 2020

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Richard A Gibbs

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13 June 2020

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Lora Lewis

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13 June 2020

author name string

Andreas Massouras

2

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13 June 2020

Yutaka Inoue

3

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Jason Peiffer

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13 June 2020

Miquel Ràmia

5

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13 June 2020

Lavanya Turlapati

7

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13 June 2020

Dianhui Zhu

9

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13 June 2020

Richard F Lyman

10

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13 June 2020

Michael M Magwire

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13 June 2020

Kerstin Blankenburg

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Lisa L Ellis

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13 June 2020

Sonia Fernandez

16

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13 June 2020

Yi Han

17

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13 June 2020

John R Jack

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13 June 2020

Mehwish Javaid

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Joy Jayaseelan

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Divya Kalra

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13 June 2020

Sandy Lee

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Mala Munidasa

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Fiona Ongeri

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Shohba Patel

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Lora Perales

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Agapito Perez

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LingLing Pu

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Robert Ruth

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Nehad Saada

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Crystal Warner

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Aneisa Williams

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Yuan-Qing Wu

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13 June 2020

Akihiko Yamamoto

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13 June 2020

Yiqing Zhang

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Yiming Zhu

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Jan O Korbel

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Antonio Barbadilla

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J Spencer Johnston

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Eric A Stone

48

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13 June 2020

publication date

8 April 2014

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29 July 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24714809%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

volume

24

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13 June 2020

page(s)

1193-1208

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13 June 2020

issue

7

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Intrapopulation genome size variation in D. melanogaster reflects life history variation and plasticity.

13 June 2020

cites work

1 reference

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Epistasis and quantitative traits: using model organisms to study gene-gene interactions

5 July 2018

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Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden

5 July 2018

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Genome-wide association study of sleep in Drosophila melanogaster

5 July 2018

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Fine-scale signatures of molecular evolution reconcile models of indel-associated mutation

5 July 2018

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The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes

5 July 2018

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Strong mutational bias toward deletions in the Drosophila melanogaster genome is compensated by selection

5 July 2018

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Population genomics of the Wolbachia endosymbiont in Drosophila melanogaster

5 July 2018

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Population genomics of inversion polymorphisms in Drosophila melanogaster

5 July 2018

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Analysis of natural variation reveals neurogenetic networks for Drosophila olfactory behavior

5 July 2018

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Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

5 July 2018

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Genomic variation and its impact on gene expression in Drosophila melanogaster

5 July 2018

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FlyBase: improvements to the bibliography

5 July 2018

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The many landscapes of recombination in Drosophila melanogaster

5 July 2018

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DELLY: structural variant discovery by integrated paired-end and split-read analysis

5 July 2018

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Epistasis dominates the genetic architecture of Drosophila quantitative traits

5 July 2018

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A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence

5 July 2018

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Optimal unified approach for rare-variant association testing with application to small-sample case-control whole-exome sequencing studies

5 July 2018

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A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

5 July 2018

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Genome-wide association for sensitivity to chronic oxidative stress in Drosophila melanogaster

5 July 2018

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Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster

5 July 2018

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Genome-wide association analysis of oxidative stress resistance in Drosophila melanogaster

5 July 2018

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Joint genotyping on the fly: identifying variation among a sequenced panel of inbred lines

5 July 2018

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A strong deletion bias in nonallelic gene conversion

5 July 2018

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The Drosophila melanogaster Genetic Reference Panel

5 July 2018

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FlyBase 101--the basics of navigating FlyBase

5 July 2018

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Variation in the mutation rate across mammalian genomes

5 July 2018

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Challenges in studying genomic structural variant formation mechanisms: the short-read dilemma and beyond

5 July 2018

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Multiple reference genomes and transcriptomes for Arabidopsis thaliana

5 July 2018

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Rare-variant association testing for sequencing data with the sequence kernel association test

5 July 2018

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Clusters of nucleotide substitutions and insertion/deletion mutations are associated with repeat sequences

5 July 2018

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Chromatin: constructing the big picture

5 July 2018

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The Drosophila gene disruption project: progress using transposons with distinctive site specificities

5 July 2018

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

5 July 2018

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Genome structural variation discovery and genotyping

5 July 2018

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5 July 2018

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Discovery and genotyping of genome structural polymorphism by sequencing on a population scale

5 July 2018

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Mapping copy number variation by population-scale genome sequencing

5 July 2018

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Identification of functional elements and regulatory circuits by Drosophila modENCODE

5 July 2018

1 reference

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Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity

5 July 2018

1 reference

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Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

5 July 2018

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Detecting copy number variation with mated short reads

5 July 2018

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

5 July 2018

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Powerful SNP-set analysis for case-control genome-wide association studies

5 July 2018

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Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?

5 July 2018

1 reference

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A data-adaptive sum test for disease association with multiple common or rare variants

5 July 2018

1 reference

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Fast and accurate long-read alignment with Burrows-Wheeler transform

5 July 2018

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A SNP discovery method to assess variant allele probability from next-generation resequencing data

5 July 2018

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Epistatic interactions attenuate mutations affecting startle behaviour in Drosophila melanogaster

5 July 2018

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The genetics of quantitative traits: challenges and prospects

5 July 2018

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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

5 July 2018

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Genetic architecture of quantitative traits in mice, flies, and humans

5 July 2018

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DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Systems genetics of complex traits in Drosophila melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

The bacterial symbiont Wolbachia induces resistance to RNA viral infections in Drosophila melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

A groupwise association test for rare mutations using a weighted sum statistic

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Evolution of genes and genomes on the Drosophila phylogeny

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

What a difference a decade makes: insights into translesion DNA synthesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

PLINK: a tool set for whole-genome association and population-based linkage analyses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Inversion Clines in Populations of DROSOPHILA MELANOGASTER.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Principal components analysis corrects for stratification in genome-wide association studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Chromosome inversions, local adaptation and speciation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Insertion/deletion and nucleotide polymorphism data reveal constraints in Drosophila melanogaster introns and intergenic regions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

VISTA: computational tools for comparative genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Mutational equilibrium model of genome size evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Effect of inversion polymorphism on the neutral nucleotide variability of linked chromosomal regions in Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

EMBOSS: the European Molecular Biology Open Software Suite

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Cloning and characterization of a gene encoding the major surface protein of the bacterial endosymbiont Wolbachia pipientis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Recombination and gene flux caused by gene conversion and crossing over in inversion heterokaryotypes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

The effect of deleterious mutations on neutral molecular variation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Lateral transfer in natural populations of eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Heritable genetic variation via mutation-selection balance: Lerch's zeta meets the abdominal bristle

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Chromosome studies in wild populations of D. melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Genome size determination using flow cytometry of propidium iodide-stained nuclei.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

FaST linear mixed models for genome-wide association studies

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Primer-initiated sequence synthesis to detect and assemble structural variants.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Efficient methods to compute genomic predictions

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079974

Inversion polymorphisms and nucleotide variability in Drosophila

29 October 2018

1 reference

12 December 2020

Shotgun sequence assembly and recent segmental duplications within the human genome

1 reference

12 December 2020

UNIDIRECTIONAL INCOMPATIBILITY BETWEEN POPULATIONS OF DROSOPHILA SIMULANS.

1 reference

12 December 2020

The effect of linkage on limits to artificial selection

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.171546.113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24714809%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24714809%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24714809%20AND%20SRC:MED&resulttype=core&format=json