Theoretical model of prion propagation: a misfolded protein induces misfolding (Q33841112)

29 July 2017

Theoretical model of prion propagation: a misfolded protein induces misfolding (English)

1 reference

29 July 2017

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Andrzej Kolinski

3

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author name string

Edyta Małolepsza

series ordinal

1

1 reference

29 July 2017

Michal Boniecki

series ordinal

2

1 reference

29 July 2017

Lucjan Piela

series ordinal

4

1 reference

29 July 2017

language of work or name

English

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publication date

23 May 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

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29 July 2017

102

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29 July 2017

22

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29 July 2017

7835-7840

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Molecular dynamics simulation of amyloid beta dimer formation

29 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Protein modeling and structure prediction with a reduced representation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Progress towards a molecular-level structural understanding of amyloid fibrils

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Protein fragment reconstruction using various modeling techniques

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

From conversion to aggregation: protofibril formation of the prion protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

NMR-detected hydrogen exchange and molecular dynamics simulations provide structural insight into fibril formation of prion protein fragment 106-126.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

TOUCHSTONE: a unified approach to protein structure prediction.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Molecular dynamics simulation of dimeric and monomeric forms of human prion protein: insight into dynamics and properties

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Emerging ideas on the molecular basis of protein and peptide aggregation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Protein conformational misfolding and amyloid formation: characteristics of a new class of disorders that include Alzheimer's and Prion diseases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Exploring protein aggregation and self-propagation using lattice models: phase diagram and kinetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

The role of dimerization in prion replication

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Structural studies of the scrapie prion protein by electron crystallography

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

PABMB Lecture. Protein dynamics, folding and misfolding: from basic physical chemistry to human conformational diseases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Conformational propagation with prion-like characteristics in a simple model of protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Mapping the early steps in the pH-induced conformational conversion of the prion protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Amyloid fibrils from muscle myoglobin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Accurate reconstruction of all-atom protein representations from side-chain-based low-resolution models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Mammalian prion proteins.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

5 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

On the origin of the cooperativity of protein folding: implications from model simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Navigating the folding routes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Creutzfeldt-Jakob Disease (Spongiform Encephalopathy): Transmission to the Chimpanzee

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Predicted alpha-helical regions of the prion protein when synthesized as peptides form amyloid

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142357

Spongiform encephalopathies. The prion's perplexing persistence.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409389102

Solid state NMR reveals a pH-dependent antiparallel beta-sheet registry in fibrils formed by a beta-amyloid peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409389102

High pressure induces scrapie-like prion protein misfolding and amyloid fibril formation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409389102

Molecular dynamics simulation of the unfolding of the human prion protein domain under low pH and high temperature conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409389102

Helix versus sheet formation in a small peptide.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409389102

Replica Monte Carlo simulation of spin glasses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409389102

21 January 2018

Folding by association

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15911770

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Minimal model for studying prion-like folding pathways

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15911770

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15911770

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0409389102

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference