Inferring species-level phylogenies and taxonomic distinctiveness using multilocus data in Sistrurus rattlesnakes (Q33841674)

29 July 2017

Inferring species-level phylogenies and taxonomic distinctiveness using multilocus data in Sistrurus rattlesnakes (English)

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29 July 2017

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Laura S Kubatko

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author name string

H Lisle Gibbs

series ordinal

2

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PubMed ID

21389297

29 July 2017

Erik W Bloomquist

series ordinal

3

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29 July 2017

9 March 2011

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29 July 2017

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29 July 2017

60

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29 July 2017

4

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29 July 2017

393-409

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Bayesian estimation of concordance among gene trees.

29 July 2017

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Multilocus phylogenetics of a rapid radiation in the genus Thomomys (Rodentia: Geomyidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Mitochondrial DNA phylogeography of the polytypic North American rat snake (Elaphe obsoleta): a critique of the subspecies concept

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Phylogeographic analysis of the cornsnake (Elaphe guttata) complex as inferred from maximum likelihood and Bayesian analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Species delimitation using a combined coalescent and information-theoretic approach: an example from North American Myotis bats

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Phylogeographic structure and historical demography of the western diamondback rattlesnake (Crotalus atrox): A perspective on North American desert biogeography

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

A genealogical approach to quantifying lineage divergence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Evolution of rattlesnakes (Viperidae; Crotalus) in the warm deserts of western North America shaped by Neogene vicariance and Quaternary climate change

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

BEAST: Bayesian evolutionary analysis by sampling trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Is a new and general theory of molecular systematics emerging?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

High-resolution species trees without concatenation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Phylogeography of Diadophis punctatus: extensive lineage diversity and repeated patterns of historical demography in a trans-continental snake

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Hybridization between mtDNA-defined phylogeographic lineages of black ratsnakes (Pantherophis sp.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Identification of single copy nuclear DNA markers for North American pit vipers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Rapid evolution by positive selection and gene gain and loss: PLA(2) venom genes in closely related Sistrurus rattlesnakes with divergent diets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Snake population venomics: proteomics-based analyses of individual variation reveals significant gene regulation effects on venom protein expression in Sistrurus rattlesnakes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Conflicting phylogenetic signal of nuclear vs mitochondrial DNA markers in midwife toads (Anura, Discoglossidae, Alytes): deep coalescence or ancestral hybridization?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Demographic and phylogeographic histories of two venomous North American snakes of the genus Agkistrodon

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Computation vs. cloning: evaluation of two methods for haplotype determination.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Bayesian inference of species trees from multilocus data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Mathematical consequences of the genealogical species concept.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

A Likelihood-Ratio Test of Monophyly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Delimiting species without monophyletic gene trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Automated phylogenetic detection of recombination using a genetic algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Inconsistency of phylogenetic estimates from concatenated data under coalescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Species tree discordance traces to phylogeographic clade boundaries in North American fence lizards (Sceloporus)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Species trees for spiny lizards (genus Sceloporus): identifying points of concordance and conflict between nuclear and mitochondrial data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Phylogenetic relationships of horned lizards (Phrynosoma) based on nuclear and mitochondrial data: evidence for a misleading mitochondrial gene tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Mitonuclear discordance is caused by rampant mitochondrial introgression in Neodiprion (Hymenoptera: Diprionidae) sawflies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Coalescent methods for estimating phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Estimating species phylogenies using coalescence times among sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Performance-based selection of likelihood models for phylogeny estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

New heuristic methods for joint species delimitation and species tree inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Phylogeography of the pitviper clade Agkistrodon: historical ecology, species status, and conservation of cantils

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Historical biogeography of the Western Rattlesnake (Serpentes: viperidae: Crotalus viridis), inferred from mitochondrial DNA sequence information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

DnaSP, DNA polymorphism analyses by the coalescent and other methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Venom proteomes of closely related Sistrurus rattlesnakes with divergent diets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Phylogenetic relationships of the lamprologine cichlid genus Lepidiolamprologus (Teleostei: Perciformes) based on mitochondrial and nuclear sequences, suggesting introgressive hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Molecular phylogeny and biogeography of Kinosternon flavescens based on complete mitochondrial control region sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Comparative phylogeography of unglaciated eastern North America

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

A New Statistical Method for Haplotype Reconstruction from Population Data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Species tree inference by minimizing deep coalescences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Higher-level relationships of caenophidian snakes inferred from four nuclear and mitochondrial genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Multiple nuclear gene sequences identify phylogenetic species boundaries in the rapidly radiating clade of Mexican ambystomatid salamanders.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Branch lengths, support, and congruence: testing the phylogenomic approach with 20 nuclear loci in snakes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Bayesian species delimitation using multilocus sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

Targeting optimal introns for phylogenetic analyses in non-model taxa: experimental results in Asian pitvipers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR011

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYR011

1 reference

29 July 2017

1 reference

PubMed ID

21389297