DNA repair: models for damage and mismatch recognition (Q33844428)

29 July 2017

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title

DNA repair: models for damage and mismatch recognition (English)

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29 July 2017

Rajski SR

1

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29 July 2017

Jackson BA

series ordinal

2

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29 July 2017

Barton JK

series ordinal

3

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29 July 2017

language of work or name

English

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publication date

1 January 2000

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29 July 2017

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29 July 2017

volume

447

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29 July 2017

issue

1

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29 July 2017

page(s)

49-72

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DNA oxidation matters: the HPLC-electrochemical detection assay of 8-oxo-deoxyguanosine and 8-oxo-guanine

29 July 2017

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7 January 2021

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High-resolution structure of a DNA helix containing mismatched base pairs.

7 January 2021

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Structure of an adenine-cytosine base pair in DNA and its implications for mismatch repair

7 January 2021

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Molecular structure of the G.A base pair in DNA and its implications for the mechanism of transversion mutations

7 January 2021

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Structural and thermodynamic studies on the adenine.guanine mismatch in B-DNA

7 January 2021

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Helix geometry, hydration, and G.A mismatch in a B-DNA decamer

7 January 2021

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Crystal structure of an oligonucleotide duplex containing G.G base pairs: influence of mispairing on DNA backbone conformation

7 January 2021

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Crystal structure of a DNA duplex containing 8-hydroxydeoxyguanine-adenine base pairs

7 January 2021

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Rotational correlation times of internuclear vectors in a DNA duplex with G-A mismatch determined in aqueous solution by complete relaxation matrix analysis of off-resonance ROESY (O-ROESY) spectra

7 January 2021

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Solution structure of two mismatches G.G and I.I in the K-ras gene context by nuclear magnetic resonance and molecular dynamics

7 January 2021

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The pH dependent configurations of the C.A mispair in DNA

7 January 2021

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NMR solution structure of a DNA dodecamer containing single G.T mismatches

7 January 2021

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Monofunctional platinum amine complexes destabilize DNA significantly.

7 January 2021

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NMR solution structure of a DNA dodecamer duplex containing a cis-diammineplatinum(II) d(GpG) intrastrand cross-link, the major adduct of the anticancer drug cisplatin

7 January 2021

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Styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 12: minor groove structures of the R(12,1)- and S(12,1)-alpha-(N2-guanyl) stereoisomers determined by 1H nuclear magnetic resonance

7 January 2021

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Solution structure of the aminofluorene [AF]-intercalated conformer of the syn-[AF]-C8-dG adduct opposite dC in a DNA duplex.

7 January 2021

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X-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine

7 January 2021

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Recognition and repair of 8-oxoguanine and formamidopyrimidine lesions in DNA.

7 January 2021

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Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition

7 January 2021

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DNA repair mechanisms for the recognition and removal of damaged DNA bases.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

What structural features determine repair enzyme specificity and mechanism in chemically modified DNA?

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

DNA lesions. A thermodynamic perspective

7 January 2021

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Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Thermodynamics of internal C.T mismatches in DNA.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA

7 January 2021

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Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects

7 January 2021

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A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Thermodynamics and NMR of internal G.T mismatches in DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Conformational Flexibility in DNA Duplexes Containing Single G . G Mismatches

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Solution structure of a DNA duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite 2'-deoxyguanosine

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Endonuclease III is an iron-sulfur protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Mechanism of action of Escherichia coli endonuclease III

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Escherichia coli MutY protein has both N-glycosylase and apurinic/apyrimidinic endonuclease activities on A.C and A.G mispairs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Human MutSalpha recognizes damaged DNA base pairs containing O6-methylguanine, O4-methylthymine, or the cisplatin-d(GpG) adduct

7 January 2021

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Mismatch repair, genetic stability, and cancer

7 January 2021

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Mismatch repair in replication fidelity, genetic recombination, and cancer biology

7 January 2021

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Release of normal bases from intact DNA by a native DNA repair enzyme

7 January 2021

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Repair of DNA methylphosphotriesters through a metalloactivated cysteine nucleophile

7 January 2021

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Metal dependence of transcriptional switching in Escherichia coli Ada.

7 January 2021

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7 January 2021

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Structures of HhaI methyltransferase complexed with substrates containing mismatches at the target base

7 January 2021

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HhaI methyltransferase flips its target base out of the DNA helix

7 January 2021

1 reference

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The crystal structure of Haelll methyltransferase covalently complexed to DNA: An extrahelical cytosine and rearranged base pairing

7 January 2021

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Finding a basis for flipping bases.

7 January 2021

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Base eversion and shuffling by DNA methyltransferases

7 January 2021

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The flip side of DNA methylation

7 January 2021

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7 January 2021

1 reference

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Envisioning the molecular choreography of DNA base excision repair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

The structural basis of specific base-excision repair by uracil-DNA glycosylase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Precluding uracil from DNA

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Substrate specificity of Escherichia coli MutY protein.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Cloning, overexpression, and biochemical characterization of the catalytic domain of MutY

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Thermodynamic analysis of biomolecules: a volumetric approach

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

The DNA damage-recognition problem in human and other eukaryotic cells: the XPA damage binding protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

How do DNA repair proteins locate damaged bases in the genome?

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Recognition and reaction of metallointercalators with DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Oxidative Strand Scission of Nucleic Acids: Routes Initiated by Hydrogen Abstraction from the Sugar Moiety

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Site-specific inhibition of transcription factor binding to DNA by a metallointercalator

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

A versatile mismatch recognition agent: specific cleavage of a plasmid DNA at a single base mispair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

A carboxy terminal domain of the hMSH-2 gene product is sufficient for binding specific mismatched oligonucleotides

7 January 2021

1 reference

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Analysis of the mismatch and insertion/deletion binding properties of Thermus thermophilus, HB8, MutS.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Femtosecond dynamics of DNA-mediated electron transfer.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Long-range oxidative damage to DNA: effects of distance and sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Fast photoinduced electron transfer through DNA intercalation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Long-range photoinduced electron transfer through a DNA helix

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Electron transfer between bases in double helical DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

NMR studies of the exocyclic 1,N6-ethenodeoxyadenosine adduct (epsilon dA) opposite thymidine in a DNA duplex. Nonplanar alignment of epsilon dA(anti) and dT(anti) at the lesion site

7 January 2021

1 reference

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Structure and dynamics of a fluorescent DNA oligomer containing the EcoRI recognition sequence: fluorescence, molecular dynamics, and NMR studies

7 January 2021

1 reference

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Photoinduced Electron Transfer in Ethidium-Modified DNA Duplexes: Dependence on Distance and Base Stacking

7 January 2021

1 reference

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DNA-mediated electron transfer from a modified base to ethidium: pi-stacking as modulator of reactivity

7 January 2021

1 reference

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7 January 2021

1 reference

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Nucleic-acid immobilization, recognition and detection at chronopotentiometric DNA chips

7 January 2021

1 reference

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Electrochemistry of methylene blue bound to a DNA-modified electrode.

7 January 2021

1 reference

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Orienting DNA Helices on Gold Using Applied Electric Fields

7 January 2021

1 reference

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Long-Range Electron Transfer through DNA Films

7 January 2021

1 reference

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Formaldehyde cross-links daunorubicin and DNA efficiently: HPLC and X-ray diffraction studies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Single-base mismatch detection based on charge transduction through DNA

7 January 2021

1 reference

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Oxidative DNA damage through long-range electron transfer

7 January 2021

1 reference

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Oxidative thymine dimer repair in the DNA helix

7 January 2021

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Oxidative Nucleobase Modifications Leading to Strand Scission

7 January 2021

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Long-range oxidation of guanine by Ru(III) in duplex DNA.

7 January 2021

1 reference

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Oxidative charge transfer To repair thymine dimers and damage guanine bases in DNA assemblies containing tethered metallointercalators

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Structure and function of DNA photolyase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Functional diversity of the DNA photolyase/blue light receptor family

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Chemistry of Glycosylases and Endonucleases Involved in Base-Excision Repair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

The structure of iron-sulfur proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

A substrate recognition role for the [4Fe-4S]2+ cluster of the DNA repair glycosylase MutY

7 January 2021

1 reference

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SoxR, a [2Fe-2S] transcription factor, is active only in its oxidized form

7 January 2021

1 reference

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Iron-sulfur cluster disassembly in the FNR protein of Escherichia coli by O2: [4Fe-4S] to [2Fe-2S] conversion with loss of biological activity.

7 January 2021

1 reference

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Oxygen sensing by the global regulator, FNR: the role of the iron-sulfur cluster

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Association of a polynuclear iron-sulfur center with a mutant FNR protein enhances DNA binding

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Structural requirements for DNA binding of GCM proteins

7 January 2021

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Ref-1 controls pax-8 DNA-binding activity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0027-5107%2899%2900195-5

Phosphorylation of the DNA repair protein APE/REF-1 by CKII affects redox regulation of AP-1

7 January 2021

1 reference

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10.1016/S0027-5107(99)00195-5

7 January 2021

Identifiers

DOI

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29 July 2017

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