The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons (Q33851829)

29 July 2017

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title

The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons (English)

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29 July 2017

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Evolutionary dynamics

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Furano AV

1

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29 July 2017

publication date

1 January 2000

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Progress in Molecular Biology and Translational Science

29 July 2017

published in

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29 July 2017

volume

64

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29 July 2017

page(s)

255-294

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Origin and evolution of retroelements based upon their reverse transcriptase sequences

29 July 2017

cites work

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7 January 2021

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Identification of transcriptional regulatory activity within the 5′ A-type monomer sequence of the mouse LINE-1 retroposon

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7 January 2021

An actively retrotransposing, novel subfamily of mouse L1 elements

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7 January 2021

Identification, characterization, and cell specificity of a human LINE-1 promoter

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7 January 2021

Origin of the human L1 elements: proposed progenitor genes deduced from a consensus DNA sequence

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7 January 2021

The structure of the regulatory region of the rat L1 (L1Rn, long interspersed repeated) DNA family of transposable elements

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7 January 2021

The L1 family of long interspersed repetitive DNA in rabbits: sequence, copy number, conserved open reading frames, and similarity to keratin

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7 January 2021

The relationships between the 5' end repeats and the largest members of the L1 interspersed repeated family in the mouse genome

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7 January 2021

Recombination between subtypes creates a mosaic lineage of LINE-1 that is expressed and actively retrotransposing in the mouse genome

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7 January 2021

The evolution of long interspersed repeated DNA (L1, LINE 1) as revealed by the analysis of an ancient rodent L1 DNA family

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7 January 2021

Amplification of the ancient murine Lx family of long interspersed repeated DNA occurred during the murine radiation

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7 January 2021

Unit-length line-1 transcripts in human teratocarcinoma cells

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7 January 2021

Strand-specific LINE-1 transcription in mouse F9 cells originates from the youngest phylogenetic subgroup of LINE-1 elements

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7 January 2021

Determination of the evolutionary relationships in Rattus sensu lato (Rodentia : Muridae) using L1 (LINE-1) amplification events

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Full-length L1 elements have arisen recently in the same 1-kb region of the gorilla and human genomes

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Man's place in Hominoidea revealed by mitochondrial DNA genealogy

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7 January 2021

Mutation pattern variation among regions of the primate genome

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

An evaluation of the molecular clock hypothesis using mammalian DNA sequences

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Selective cloning and sequence analysis of the human L1 (LINE-1) sequences which transposed in the relatively recent past

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

CpG-rich islands and the function of DNA methylation

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7 January 2021

The DNA methylation paradox

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man.

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7 January 2021

A new retrotransposable human L1 element from the LRE2 locus on chromosome 1q produces a chimaeric insertion

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7 January 2021

A sensitive RNase protection assay to detect transcripts from potentially functional human endogenous L1 retrotransposons

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Insertional mutagenesis of the myc locus by a LINE-1 sequence in a human breast carcinoma

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Identification of an internal cis-element essential for the human Li transcription and a nuclear factor(s) binding to the element

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Binding of the ubiquitous nuclear transcription factor YY1 to a cis regulatory sequence in the human LINE-1 transposable element

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Revised genomic consensus for the hypermethylated CpG island region of the human L1 transposon and integration sites of full length L1 elements from recombinant clones made using methylation-tolerant host strains

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

RNA polymerase III dependence of the human L1 promoter and possible participation of the RNA polymerase II factor YY1 in the RNA polymerase III transcription system

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7 January 2021

RglB facilitated cloning of highly methylated eukaryotic DNA: the human L1 transposon, plant DNA, and DNA methylated in vitro with human DNA methyltransferase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Asymmetric methylation in the hypermethylated CpG promoter region of the human L1 retrotransposon

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7 January 2021

Undermethylation of specific LINE-1 sequences in human cells producing a LINE-1-encoded protein

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7 January 2021

Apolipoprotein(a) gene enhancer resides within a LINE element

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7 January 2021

Identification of critical CpG sites for repression of L1 transcription by DNA methylation

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7 January 2021

Ribonucleoprotein particles with LINE-1 RNA in mouse embryonal carcinoma cells

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7 January 2021

Synchronous expression of LINE-1 RNA and protein in mouse embryonal carcinoma cells

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7 January 2021

Polymorphic sequences encoding the first open reading frame protein from LINE-1 ribonucleoprotein particles

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7 January 2021

Developmental and cell type specificity of LINE-1 expression in mouse testis: implications for transposition

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7 January 2021

Discrete high molecular weight RNA transcribed from the long interspersed repetitive element L1Md

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7 January 2021

A discrete LINE-1 transcript in mouse blastocysts.

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7 January 2021

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

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7 January 2021

Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA

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7 January 2021

The L1Md long interspersed repeat family in the mouse: almost all examples are truncated at one end

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Characterization of a LINE-1 cDNA that originated from RNA present in ribonucleoprotein particles: implications for the structure of an active mouse LINE-1.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Target sites for the transposition of rat long interspersed repeated DNA elements (LINEs) are not random

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

The evolution of an intron: analysis of a long, deletion-prone intron in the human dystrophin gene

1 reference

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7 January 2021

Amplification of CFTR exon 9 sequences to multiple locations in the human genome

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Conserved features at the 5 end of Drosophila R2 retrotransposable elements: implications for transcription and translation

1 reference

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7 January 2021

The site-specific ribosomal insertion element type II of Bombyx mori (R2Bm) contains the coding sequence for a reverse transcriptase-like enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

The site-specific ribosomal DNA insertion element R1Bm belongs to a class of non-long-terminal-repeat retrotransposons

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

A small-scale procedure for preparation of nuclear extracts that support efficient transcription and pre-mRNA splicing

1 reference

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7 January 2021

Rapid detection of octamer binding proteins with 'mini-extracts', prepared from a small number of cells

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7 January 2021

Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Demethylation and specific remethylation of the promoter-like region of the L family of mammalian transposable elements

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

The sequence of a large L1Md element reveals a tandemly repeated 5' end and several features found in retrotransposons

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

The effect of E. coli host strain on the consensus sequence of regions of the human L1 transposon

1 reference

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7 January 2021

Swimmer 1, a new low-copy-number LINE family in teleost genomes with sequence similarity to mammalian L1.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Structure of the highly repeated, long interspersed DNA family (LINE or L1Rn) of the rat

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Rat LINE1: the origin and evolution of a family of long interspersed middle repetitive DNA elements.

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7 January 2021

Basic local alignment search tool

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7 January 2021

PROSITE: a dictionary of sites and patterns in proteins

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7 January 2021

Reverse transcriptase activity from human embryonal carcinoma cells NTera2D1

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Sequence-specific single-strand RNA binding protein encoded by the human LINE-1 retrotransposon

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Ribonuclease and high salt sensitivity of the ribonucleoprotein complex formed by the human LINE-1 retrotransposon.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

High frequency retrotransposition in cultured mammalian cells

1 reference

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7 January 2021

Functional expression of a sequence-specific endonuclease encoded by the retrotransposon R2Bm

1 reference

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7 January 2021

Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

RNA-induced changes in the activity of the endonuclease encoded by the R2 retrotransposable element

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Characterization of a non-long terminal repeat retrotransposon cDNA (L1Tc) from Trypanosoma cruzi: homology of the first ORF with the ape family of DNA repair enzymes.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition

1 reference

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7 January 2021

The open reading frame 1 of the L1Tc retrotransposon of Trypanosoma cruzi codes for a protein with apurinic-apyrimidinic nuclease activity

1 reference

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7 January 2021

Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure.

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7 January 2021

Origins and evolutionary relationships of retroviruses

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

The LINE-1 DNA sequences in four mammalian orders predict proteins that conserve homologies to retrovirus proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Functional reverse transcriptases encoded by A-type mouse LINE-1: defining the minimal domain by deletion analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Reverse Transcriptase Encoded by a Human Transposable Element

1 reference

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7 January 2021

An in vivo assay for the reverse transcriptase of human retrotransposon L1 in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Many human L1 elements are capable of retrotransposition

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Functional differences between the human LINE retrotransposon and retroviral reverse transcriptases for in vivo mRNA reverse transcription

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Transcriptional regulation and transpositional selection of active SINE sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

The ability to form intrastrand tetraplexes is an evolutionarily conserved feature of the 3' end of L1 retrotransposons

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

DNA synthesis arrest sites at the right terminus of rat long interspersed repeated (LINE or L1Rn) DNA family members

1 reference

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7 January 2021

The development and use of a DNA polymerase arrest assay for the evaluation of parameters affecting intrastrand tetraplex formation

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7 January 2021

A sodium-potassium switch in the formation of four-stranded G4-DNA

1 reference

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7 January 2021

Structure, Replication, and Recombination of Retrovirus Genomes: Some Unifying Hypotheses

1 reference

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7 January 2021

Rate and mechanism of nonhomologous recombination during a single cycle of retroviral replication.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Exon shuffling by L1 retrotransposition

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Phylogenetic history of LINE-1 among arvicolid rodents

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Extensive movement of LINES ONE sequences in beta-globin loci of Mus caroli and Mus domesticus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Composite of A and F-type 5' terminal sequences defines a subfamily of mouse LINE-1 elements

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

The dynamics of murine LINE-1 subfamily amplification

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Systematic identification of LINE-1 repetitive DNA sequence differences having species specificity between Mus spretus and Mus domesticus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Computer simulation of transposable element evolution: random template and strict master models.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

The powers and pitfalls of parsimony

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

DNA "fossils" and phylogenetic analysis. Using L1 (LINE-1, long interspersed repeated) DNA to determine the evolutionary history of mammals

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

L1 (LINE-1) retrotransposable elements provide a "fossil" record of the phylogenetic history of murid rodents

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Molecular evidence from retroposons that whales form a clade within even-toed ungulates.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

A novel family of short interspersed repetitive elements (SINEs) from cichlids: the patterns of insertion of SINEs at orthologous loci support the proposed monophyly of four major groups of cichlid fishes in Lake Tanganyika

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Short retroposons of the B2 superfamily: evolution and application for the study of rodent phylogeny

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

‘SINEs of the times’ — transposable elements as clade markers for their hosts

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Mobile elements and disease

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Characterization of multiple enhancer regions upstream of the apolipoprotein(a) gene

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Reconstructing hominid Y evolution: X-homologous block, created by X-Y transposition, was disrupted by Yp inversion through LINE-LINE recombination.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Unequal homologous recombination between LINE-1 elements as a mutational mechanism in human genetic disease

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

LINE-1 elements at the sites of molecular rearrangements in Alport syndrome-diffuse leiomyomatosis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Human hydroxyindole-O-methyltransferase: presence of LINE-1 fragment in a cDNA clone and pineal mRNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

L1 repeat is a basic unit of heterochromatin satellites in cetaceans

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Site-specific retrotransposition of L1 elements within human alphoid satellite sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

SINE and LINE within human centromeres.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2800%2964007-2

7 January 2021

Rapid amplification of a retrotransposon subfamily is evolving the mouse genome

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7 January 2021

I transposable elements and I-R hybrid dysgenesis in Drosophila

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7 January 2021

A model system for nonhomologous recombination between retroviral and cellular RNA.

1 reference

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7 January 2021

10.1016/S0079-6603(00)64007-2

Identifiers

DOI

1 reference

29 July 2017

1 reference