Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199. (Q33853412)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10049392%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

title

Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199 (English)

1 reference

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Sphingomonas aromaticivorans

11 November 2019

main subject

object named as

Sphingomonas aromaticivorans

1 reference

1

1 reference

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11 November 2019

Christoph W. Sensen

6

1 reference

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11 November 2019

author name string

L C Stillwell

2

1 reference

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11 November 2019

K K Wong

3

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11 November 2019

S J Thurston

4

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11 November 2019

E C Sisk

5

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11 November 2019

T Gaasterland

7

1 reference

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11 November 2019

J K Fredrickson

8

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11 November 2019

J D Saffer

9

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11 November 2019

language of work or name

English

0 references

publication date

1 March 1999

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11 November 2019

published in

Journal of Bacteriology

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11 November 2019

volume

181

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11 November 2019

issue

5

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11 November 2019

page(s)

1585-1602

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Isolation and characterization of a subsurface bacterium capable of growth on toluene, naphthalene, and other aromatic compounds

11 November 2019

cites work

1 reference

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Genetic analysis of dioxin dioxygenase of Sphingomonas sp. Strain RW1: catabolic genes dispersed on the genome

5 July 2018

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Isolation and characterization of toluene-sensitive mutants from the toluene-resistant bacterium Pseudomonas putida GM73.

5 July 2018

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Efflux pumps involved in toluene tolerance in Pseudomonas putida DOT-T1E.

5 July 2018

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Role of the multidrug efflux systems of Pseudomonas aeruginosa in organic solvent tolerance.

5 July 2018

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A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2.

5 July 2018

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Substrate specificities of hybrid naphthalene and 2,4-dinitrotoluene dioxygenase enzyme systems

5 July 2018

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The complete genome sequence of the gram-positive bacterium Bacillus subtilis

5 July 2018

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A family of gram-negative bacterial outer membrane factors that function in the export of proteins, carbohydrates, drugs and heavy metals from gram-negative bacteria

5 July 2018

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Nucleotide sequence of the Pseudomonas sp. DJ77 phnG gene encoding 2-hydroxymuconic semialdehyde dehydrogenase

5 July 2018

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cis-trans isomerization of unsaturated fatty acids: cloning and sequencing of the cti gene from Pseudomonas putida P8.

5 July 2018

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Indigo formation by microorganisms expressing styrene monooxygenase activity.

5 July 2018

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Involvement of two alpha-ketoglutarate-dependent dioxygenases in enantioselective degradation of (R)- and (S)-mecoprop by Sphingomonas herbicidovorans MH.

5 July 2018

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Novel organization of catechol meta-pathway genes in Sphingomonas sp. HV3 pSKY4 plasmid

5 July 2018

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benK encodes a hydrophobic permease-like protein involved in benzoate degradation by Acinetobacter sp. strain ADP1.

5 July 2018

1 reference

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mucK, a gene in Acinetobacter calcoaceticus ADP1 (BD413), encodes the ability to grow on exogenous cis,cis-muconate as the sole carbon source

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Molecular characterization of Fdx1, a putidaredoxin-type [2Fe-2S] ferredoxin able to transfer electrons to the dioxin dioxygenase of Sphingomonas sp. RW1.

5 July 2018

1 reference

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Group II intron from Pseudomonas alcaligenes NCIB 9867 (P25X): entrapment in plasmid RP4 and sequence analysis

5 July 2018

1 reference

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PcaK, a high-affinity permease for the aromatic compounds 4-hydroxybenzoate and protocatechuate from Pseudomonas putida

5 July 2018

1 reference

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Glutathione S-transferase-encoding gene as a potential probe for environmental bacterial isolates capable of degrading polycyclic aromatic hydrocarbons.

5 July 2018

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Cloning and sequence analysis of a novel insertion element from plasmids harbored by the carbofuran-degrading bacterium, Sphingomonas sp. CFO6.

5 July 2018

1 reference

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Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils

5 July 2018

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Functional analyses of a variety of chimeric dioxygenases constructed from two biphenyl dioxygenases that are similar structurally but different functionally

5 July 2018

1 reference

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Molecular basis of symbiosis between Rhizobium and legumes

5 July 2018

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Organic solvent tolerance and antibiotic resistance increased by overexpression of marA in Escherichia coli

5 July 2018

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Organisation of the bph gene cluster of transposon Tn4371, encoding enzymes for the degradation of biphenyl and 4-chlorobiphenyl compounds.

5 July 2018

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Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov.

5 July 2018

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Characterization of catechol catabolic genes from Rhodococcus erythropolis 1CP

5 July 2018

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Proton-dependent multidrug efflux systems

5 July 2018

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Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01

5 July 2018

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Homology between genes for aromatic hydrocarbon degradation in surface and deep-subsurface Sphingomonas strains

5 July 2018

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Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture

5 July 2018

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Cloning, sequencing, and expression of isopropylbenzene degradation genes from Pseudomonas sp. strain JR1: identification of isopropylbenzene dioxygenase that mediates trichloroethene oxidation.

5 July 2018

1 reference

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Sequencing of Comamonas testosteroni strain B-356-biphenyl/chlorobiphenyl dioxygenase genes: evolutionary relationships among Gram-negative bacterial biphenyl dioxygenases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Use of tagged random hexamer amplification (TRHA) to clone and sequence minute quantities of DNA--application to a 180 kb plasmid isolated from Sphingomonas F199.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

A group II intron in a conjugative transposon from the gram-positive bacterium, Clostridium difficile

5 July 2018

1 reference

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Description of chlorophenol-degrading Pseudomonas sp. strains KF1T, KF3, and NKF1 as a new species of the genus Sphingomonas, Sphingomonas subarctica sp. nov.

5 July 2018

1 reference

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Active efflux of toluene in a solvent-resistant bacterium

5 July 2018

1 reference

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Signal sensing by sigma 54-dependent regulators: derepression as a control mechanism

5 July 2018

1 reference

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A marine oligobacterium harboring genes known to be part of aromatic hydrocarbon degradation pathways of soil pseudomonads

5 July 2018

1 reference

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Engineering hybrid pseudomonads capable of utilizing a wide range of aromatic hydrocarbons and of efficient degradation of trichloroethylene

5 July 2018

1 reference

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Aerobic biodegradation of 4-methylquinoline by a soil bacterium

5 July 2018

1 reference

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Splicing of a group II intron involved in the conjugative transfer of pRS01 in lactococci

5 July 2018

1 reference

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Site-directed mutagenesis of conserved amino acids in the alpha subunit of toluene dioxygenase: potential mononuclear non-heme iron coordination sites

5 July 2018

1 reference

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Nucleotide sequence and characterization of the trbABC region of the IncI1 Plasmid R64: existence of the pnd gene for plasmid maintenance within the transfer region

5 July 2018

1 reference

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An integrated map of the genome of the tubercle bacillus, Mycobacterium tuberculosis H37Rv, and comparison with Mycobacterium leprae

5 July 2018

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The MarR repressor of the multiple antibiotic resistance (mar) operon in Escherichia coli: prototypic member of a family of bacterial regulatory proteins involved in sensing phenolic compounds

5 July 2018

1 reference

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Characterization of 2,2',3-trihydroxybiphenyl dioxygenase, an extradiol dioxygenase from the dibenzofuran- and dibenzo-p-dioxin-degrading bacterium Sphingomonas sp. strain RW1.

5 July 2018

1 reference

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Pseudomonas aeruginosa 142 uses a three-component ortho-halobenzoate 1,2-dioxygenase for metabolism of 2,4-dichloro- and 2-chlorobenzoate

5 July 2018

1 reference

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The Escherichia coli dsbC (xprA) gene encodes a periplasmic protein involved in disulfide bond formation

5 July 2018

1 reference

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Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102

5 July 2018

1 reference

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Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database search

5 July 2018

1 reference

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Mechanism of bacitracin resistance in gram-negative bacteria that synthesize exopolysaccharides

5 July 2018

1 reference

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Analysis of the sequence and gene products of the transfer region of the F sex factor

5 July 2018

1 reference

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A protein involved in stabilization of a large non-symbiotic plasmid of Rhizobium meliloti shows homology to eukaryotic cytoskeletal proteins and DNA-binding proteins.

5 July 2018

1 reference

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Altered intracellular targeting properties associated with mutations in the Legionella pneumophila dotA gene

5 July 2018

1 reference

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Molecular and biochemical characterization of two meta-cleavage dioxygenases involved in biphenyl and m-xylene degradation by Beijerinckia sp. strain B1.

5 July 2018

1 reference

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Cloning, expression, and sequence analysis of a lignostilbene-alpha,beta-dioxygenase gene from Pseudomonas paucimobilis TMY1009.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp. strain F199.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

The insertion sequence element ISRm2011-2 belongs to the IS630-Tc1 family of transposable elements and is abundant in Rhizobium meliloti

5 July 2018

1 reference

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Aromatic-degrading Sphingomonas isolates from the deep subsurface

5 July 2018

1 reference

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Gene 19 of plasmid R1 is required for both efficient conjugative DNA transfer and bacteriophage R17 infection

5 July 2018

1 reference

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Identification of a membrane protein and a truncated LysR-type regulator associated with the toluene degradation pathway in Pseudomonas putida F1.

5 July 2018

1 reference

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Rapid procedure for detection and isolation of large and small plasmids

5 July 2018

1 reference

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Expression of Naphthalene Oxidation Genes in Escherichia coli Results in the Biosynthesis of Indigo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Cloning and nucleotide sequence of the 2,3-dihydroxybiphenyl dioxygenase gene from the PCB-degrading strain of Pseudomonas paucimobilis Q1.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Gene organization of the first catabolic operon of TOL plasmid pWW53: production of indigo by the xylA gene product

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Genetic analysis of a relaxed substrate specificity aromatic ring dioxygenase, toluate 1,2-dioxygenase, encoded by TOL plasmid pWW0 of Pseudomonas putida

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Nucleotide sequence of the tra YALE region from IncFV plasmid pED208.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

High efficiency vectors for cosmid microcloning and genomic analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Nucleotide sequence of a regulatory region controlling alginate synthesis in Pseudomonas aeruginosa: characterization of the algR2 gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Isolation and characterization of a fluoranthene-utilizing strain of Pseudomonas paucimobilis

5 July 2018

1 reference

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Molecular cloning of the protocatechuate 4,5-dioxygenase genes of Pseudomonas paucimobilis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Temporal and spatial regulation of the symbiotic genes of Rhizobium meliloti in planta revealed by transposon Tn5-gusA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Activation of the lac genes of Tn951 by insertion sequences from Pseudomonas cepacia

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Separation and partial characterization of the enzymes of the toluene-4-monooxygenase catabolic pathway in Pseudomonas mendocina KR1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

A sequence assembly and editing program for efficient management of large projects

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Gene organization and nucleotide sequence of the primase region of IncP plasmids RP4 and R751

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

New approaches in genome analysis by pulsed-field gel electrophoresis: application to the analysis of Pseudomonas species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Purification and characterization of a two-component monooxygenase that hydroxylates nitrilotriacetate from "Chelatobacter" strain ATCC 29600

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Molecular cloning of a Pseudomonas paucimobilis gene encoding a 17-kilodalton polypeptide that eliminates HCl molecules from gamma-hexachlorocyclohexane

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Conversion of cis unsaturated fatty acids to trans, a possible mechanism for the protection of phenol-degrading Pseudomonas putida P8 from substrate toxicity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multicomponent polychlorinated-biphenyl-degrading enzyme in Pseudomonas strain LB400

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Mutational analysis of essential IncP alpha plasmid transfer genes traF and traG and involvement of traF in phage sensitivity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

DNA sequencing with chain-terminating inhibitors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Identification and molecular characterization of an efflux pump involved in Pseudomonas putida S12 solvent tolerance.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

The bphDEF meta-cleavage pathway genes involved in biphenyl/polychlorinated biphenyl degradation are located on a linear plasmid and separated from the initial bphACB genes in Rhodococcus sp. strain RHA1.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Mechanisms for solvent tolerance in bacteria.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

PCP degradation is mediated by closely related strains of the genus Sphingomonas

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

4-Methylphthalate catabolism in Burkholderia (Pseudomonas) cepacia Pc701: a gene encoding a phthalate-specific permease forms part of a novel gene cluster

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Genetic organization of the conjugal DNA processing region of the IncW plasmid R388.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

The biphenyl/polychlorinated biphenyl-degradation locus (bph) of Pseudomonas sp. LB400 encodes four additional metabolic enzymes

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Substitution of the ISP alpha subunit of biphenyl dioxygenase from Pseudomonas results in a modification of the enzyme activity.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=93550

Cis/trans isomerization of fatty acids as a defence mechanism of Pseudomonas putida strains to toxic concentrations of toluene

29 October 2018

1 reference

12 December 2020

Identification of the 4-hydroxyphenylacetate transport gene of Escherichia coli W: construction of a highly sensitive cellular biosensor

1 reference

12 December 2020

Aromatic hydrocarbon degradation by Sphingomonas yanoikuyae B1

1 reference

12 December 2020

Gentisate 1,2-dioxygenase from pseudomonas. Purification, characterization, and comparison of the enzymes from Pseudomonas testosteroni and Pseudomonas acidovorans

1 reference

12 December 2020

Generation of random fragments by sonication

1 reference

12 December 2020

Plasmid involvement in the degradation of polycyclic aromatic hydrocarbons by a Beijerinckia species

1 reference

12 December 2020

Identifiers

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10049392%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

PubMed publication ID

10049392

1 reference