Ancestry estimation and control of population stratification for sequence-based association studies (Q33856061)

29 July 2017

title

Ancestry estimation and control of population stratification for sequence-based association studies (English)

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14

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5

Dwight Stambolian

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6

Emily Y Chew

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12

Elaine R Mardis

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13

Xihong Lin

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29 July 2017

Jennifer Bragg-Gresham

3

object named as

Jennifer Bragg-Gresham

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10

Robert Fulton

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29 July 2017

Chaolong Wang

1

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29 July 2017

Xiaowei Zhan

2

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29 July 2017

Hyun Min Kang

4

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29 July 2017

Kari E Branham

7

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29 July 2017

John Heckenlively

8

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FUSION Study

9

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Richard K Wilson

11

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Sebastian Zöllner

15

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Gonçalo R Abecasis

16

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language of work or name

English

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publication date

16 March 2014

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29 July 2017

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29 July 2017

volume

46

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29 July 2017

issue

4

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29 July 2017

page(s)

409-415

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Identification of a rare coding variant in complement 3 associated with age-related macular degeneration

29 July 2017

cites work

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5 July 2018

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5 July 2018

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Discovery and statistical genotyping of copy-number variation from whole-exome sequencing depth

5 July 2018

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A quantitative comparison of the similarity between genes and geography in worldwide human populations

5 July 2018

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Genome-wide efficient mixed-model analysis for association studies

5 July 2018

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A model-based approach for analysis of spatial structure in genetic data

5 July 2018

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Extremely low-coverage sequencing and imputation increases power for genome-wide association studies

5 July 2018

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5 July 2018

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Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe

5 July 2018

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A rare penetrant mutation in CFH confers high risk of age-related macular degeneration.

5 July 2018

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Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease

5 July 2018

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Performance comparison of exome DNA sequencing technologies

5 July 2018

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Exome sequencing as a tool for Mendelian disease gene discovery

5 July 2018

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The variant call format and VCFtools

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

High-quality DNA sequence capture of 524 disease candidate genes

5 July 2018

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Low-coverage sequencing: implications for design of complex trait association studies

5 July 2018

1 reference

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Deep resequencing reveals excess rare recent variants consistent with explosive population growth

5 July 2018

1 reference

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A map of human genome variation from population-scale sequencing

5 July 2018

1 reference

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SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples

5 July 2018

1 reference

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Integrating common and rare genetic variation in diverse human populations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

New approaches to population stratification in genome-wide association studies

5 July 2018

1 reference

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Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration

5 July 2018

1 reference

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Variance component model to account for sample structure in genome-wide association studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Comparing spatial maps of human population-genetic variation using Procrustes analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Target-enrichment strategies for next-generation sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Genetics in geographically structured populations: defining, estimating and interpreting F(ST)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

The Sequence Alignment/Map format and SAMtools

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Nonmetric multidimensional scaling corrects for population structure in association mapping with different sample types

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Human genetic variation and its contribution to complex traits

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Rare variants of IFIH1, a gene implicated in antiviral responses, protect against type 1 diabetes

5 July 2018

1 reference

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Genotype-based matching to correct for population stratification in large-scale case-control genetic association studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Genetic mapping in human disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

The Population Reference Sample, POPRES: a resource for population, disease, and pharmacological genetics research

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Genes mirror geography within Europe

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Genome-wide association studies for complex traits: consensus, uncertainty and challenges

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Worldwide human relationships inferred from genome-wide patterns of variation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

PLINK: a tool set for whole-genome association and population-based linkage analyses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Population structure and eigenanalysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Principal components analysis corrects for stratification in genome-wide association studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Population structure, differential bias and genomic control in a large-scale, case-control association study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

The effects of human population structure on large genetic association studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Population stratification and spurious allelic association

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

Generating samples under a Wright-Fisher neutral model of genetic variation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084909

An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people

5 July 2018

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Differential confounding of rare and common variants in spatially structured populations

21 January 2018

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Mapping genes for NIDDM. Design of the Finland-United States Investigation of NIDDM Genetics (FUSION) Study

21 January 2018

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SNP selection and multidimensional scaling to quantify population structure

21 January 2018

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FaST linear mixed models for genome-wide association studies

21 January 2018

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On a semiparametric test to detect associations between quantitative traits and candidate genes using unrelated individuals.

21 January 2018

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21 January 2018

Identifiers

DOI

10.1038/NG.2924

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29 July 2017

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29 July 2017

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