Application of resequencing to rice genomics, functional genomics and evolutionary analysis (Q33862140)

29 July 2017

Application of resequencing to rice genomics, functional genomics and evolutionary analysis (English)

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29 July 2017

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1 reference

Longbiao Guo

1

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29 July 2017

Zhenyu Gao

series ordinal

2

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29 July 2017

Qian Qian

series ordinal

3

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29 July 2017

8 July 2014

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29 July 2017

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29 July 2017

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29 July 2017

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Creative Commons Attribution 2.0 Generic

29 July 2017

start time

8 July 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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exact match

https://scigraph.springernature.com/pub.10.1186/s12284-014-0004-7

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cites work

SNP-based analysis of genetic diversity in anther-derived rice by whole genome sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Genetic analysis of an elite super-hybrid rice parent using high-density SNP markers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

A BAC physical map of aus rice cultivar 'Kasalath', and the map-based genomic sequence of 'Kasalath' chromosome 1.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Sequencing-based genome-wide association study in rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Genes offering the potential for designing yield-related traits in rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Resequencing rice genomes: an emerging new era of rice genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

A map of rice genome variation reveals the origin of cultivated rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Efficacy of microarray profiling data combined with QTL mapping for the identification of a QTL gene controlling the initial growth rate in rice.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Recent progress using high-throughput sequencing technologies in plant molecular breeding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Dynamic intra-japonica subspecies variation and resource application

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Two evolutionary histories in the genome of rice: the roles of domestication genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Molecular evidence for a single evolutionary origin of domesticated rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Fast-forward genetics enabled by new sequencing technologies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

The role of QTLs in the breeding of high-yielding rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Limitations of next-generation genome sequence assembly

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Crop genome sequencing: lessons and rationales

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

High-throughput DNA sequencing--concepts and limitations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Next-generation DNA sequencing techniques

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

High-throughput genotyping by whole-genome resequencing.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Advantages and limitations of next-generation sequencing technologies: a comparison of electrophoresis and non-electrophoresis methods

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

RNA-Seq: a revolutionary tool for transcriptomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

New insights into the history of rice domestication

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Strategies for developing Green Super Rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Genome-wide analysis of spatial and temporal gene expression in rice panicle development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Rice domestication by reducing shattering

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

The map-based sequence of the rice genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Cytokinin oxidase regulates rice grain production

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Genetic structure and diversity in Oryza sativa L

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Allelic diversification at the C (OsC1) locus of wild and cultivated rice: nucleotide changes associated with phenotypes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Green revolution: a mutant gibberellin-synthesis gene in rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

Genome sequencing reveals agronomically important loci in rice using MutMap.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Identification and characterization of NARROW AND ROLLED LEAF 1, a novel gene regulating leaf morphology and plant architecture in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Genome-wide association studies of 14 agronomic traits in rice landraces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

A tiling microarray expression analysis of rice chromosome 4 suggests a chromosome-level regulation of transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Genetic control of rice plant architecture under domestication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

An SNP caused loss of seed shattering during rice domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Re-sequencing and genetic variation identification of a rice line with ideal plant architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Deletion in a gene associated with grain size increased yields during rice domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Control of a key transition from prostrate to erect growth in rice domestication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Rice 2020: a call for an international coordinated effort in rice functional genomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Genetic control of a transition from black to straw-white seed hull in rice domestication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Characterizations and fine mapping of a mutant gene for high tillering and dwarf in rice (Oryza sativa L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Genome-wide transcription analyses in rice using tiling microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-014-0004-7

Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086445

EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice

29 October 2018

1 reference

12 December 2020

TAC1, a major quantitative trait locus controlling tiller angle in rice

1 reference

12 December 2020

Map-based cloning of the ALK gene, which controls the gelatinization temperature of rice

1 reference

12 December 2020

Next-generation mapping of Arabidopsis genes

1 reference

12 December 2020

Genome-wide DNA polymorphisms in eliteindicarice inbreds discovered by whole-genome sequencing

1 reference

12 December 2020

OsGA20ox1, a candidate gene for a major QTL controlling seedling vigor in rice

1 reference

12 December 2020

Genomic dissection of small RNAs in wild rice (Oryza rufipogon): lessons for rice domestication

1 reference

12 December 2020

10.1186/S12284-014-0004-7

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DOI

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29 July 2017

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1 reference

29 July 2017

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