Evolution of the rpoB-psbZ region in fern plastid genomes: notable structural rearrangements and highly variable intergenic spacers (Q33870648)

29 July 2017

title

Evolution of the rpoB-psbZ region in fern plastid genomes: notable structural rearrangements and highly variable intergenic spacers (English)

1 reference

29 July 2017

Lei Gao

1

1 reference

29 July 2017

Yuan Zhou

2

1 reference

29 July 2017

Zhi-Wei Wang

3

1 reference

29 July 2017

Ying-Juan Su

4

1 reference

29 July 2017

Ting Wang

5

1 reference

29 July 2017

publication date

13 April 2011

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29 July 2017

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29 July 2017

volume

11

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29 July 2017

page(s)

64

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Phylogeny and evolution of ferns (monilophytes) with a focus on the early leptosporangiate divergences

29 July 2017

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes

5 July 2018

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Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae).

5 July 2018

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Complete nucleotide sequence of the Cryptomeria japonica D. Don. chloroplast genome and comparative chloroplast genomics: diversified genomic structure of coniferous species

5 July 2018

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5 July 2018

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Recombination diversifies chloroplast trnF pseudogenes in Arabidopsis lyrata.

5 July 2018

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5 July 2018

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Gene Relocations within Chloroplast Genomes of Jasminum and Menodora (Oleaceae) Are Due to Multiple, Overlapping Inversions

5 July 2018

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The deepest divergences in land plants inferred from phylogenomic evidence

5 July 2018

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The Complete Chloroplast Genome Sequence of Pelargonium x hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants

5 July 2018

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Specific roles of 5' RNA secondary structures in stabilizing transcripts in chloroplasts

5 July 2018

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Incongruence between primary sequence data and the distribution of a mitochondrial atp1 group II intron among ferns and horsetails

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants

5 July 2018

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Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes

5 July 2018

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

5 July 2018

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Automatic annotation of organellar genomes with DOGMA

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

Ferns diversified in the shadow of angiosperms

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

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5 July 2018

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5 July 2018

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Complete Nucleotide Sequence of the Chloroplast Genome from a Leptosporangiate Fern, Adiantum capillus-veneris L

5 July 2018

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5 July 2018

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5 July 2018

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Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants.

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii

5 July 2018

1 reference

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Structure and cotranscription of tobacco chloroplast genes for tRNAGlu(UUC), tRNATyr(GUA) and tRNAAsp(GUC).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

Control of plastid gene expression: 3' inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

A contig assembly program based on sensitive detection of fragment overlaps

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

The evolution of chloroplast genome structure in ferns

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

Unparalleled GC content in the plastid DNA of Selaginella

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

Evolution of the chloroplast trnL-trnF region in the gymnosperm lineages Taxaceae and Cephalotaxaceae

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

Chlamydomonas chloroplasts can use short dispersed repeats and multiple pathways to repair a double-strand break in the genome.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

The chloroplast genome from a lycophyte (microphyllophyte), Selaginella uncinata, has a unique inversion, transpositions and many gene losses

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

A mutation hotspot in the chloroplast genome of a conifer (Douglas-fir: Pseudotsuga) is caused by variability in the number of direct repeats derived from a partially duplicated tRNA gene

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098776

Short inverted repeats function as hotspots of intermolecular recombination giving rise to oligomers of deleted plastid DNAs (ptDNAs)

29 October 2018

1 reference

12 December 2020

Tree ferns: Monophyletic groups and their relationships as revealed by four protein-coding plastid loci

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A 3' stem/loop structure of the Chlamydomonas chloroplast atpB gene regulates mRNA accumulation in vivo

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12 December 2020

Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes

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12 December 2020

The endpoints of an inversion in wheat chloroplast DNA are associated with short repeated sequences containing homology to att-lambda

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12 December 2020

Short dispersed repeats in the Chlamydomonas chloroplast genome are collocated with sites for mRNA 3' end formation

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12 December 2020

The sequence and structure of the 3'-untranslated regions of chloroplast transcripts are important determinants of mRNA accumulation and stability

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A moss pentatricopeptide repeat protein binds to the 3' end of plastid clpP pre-mRNA and assists with mRNA maturation

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The stem-loop region of the tobacco psbA 5′UTR is an important determinant of mRNA stability and translation efficiency

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Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions

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Identifiers

DOI

10.1186/1471-2229-11-64

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29 July 2017

0 references

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29 July 2017

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