Branch-and-terminate: a combinatorial optimization algorithm for protein design (Q33875903)

29 July 2017

Branch-and-terminate: a combinatorial optimization algorithm for protein design (English)

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29 July 2017

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optimization algorithm

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Gordon DB

1

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PubMed ID

10508778

29 July 2017

Mayo SL

series ordinal

2

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29 July 2017

1 September 1999

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29 July 2017

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29 July 2017

7

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29 July 2017

1089-1098

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29 July 2017

9

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De novo protein design: fully automated sequence selection

29 July 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Design, structure and stability of a hyperthermophilic protein variant

1 reference

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7 January 2021

All in one: a highly detailed rotamer library improves both accuracy and speed in the modelling of sidechains by dead-end elimination

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https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Conformation of amino acid side-chains in proteins

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https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Accurate prediction of the stability and activity effects of site-directed mutagenesis on a protein core

1 reference

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7 January 2021

Optimal sequence selection in proteins of known structure by simulated evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Protein design automation

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Predicting protein mutant energetics by self-consistent ensemble optimization.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

The dead-end elimination theorem and its use in protein side-chain positioning

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

The fuzzy-end elimination theorem: correctly implementing the side chain placement algorithm based on the dead-end elimination theorem

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Efficient rotamer elimination applied to protein side-chains and related spin glasses

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Construction of new ligand binding sites in proteins of known structure

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Global optimum protein threading with gapped alignment and empirical pair score functions.

1 reference

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7 January 2021

Pairwise and multiple identification of three-dimensional common substructures in proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

AmbiPack: a systematic algorithm for packing of macromolecular structures with ambiguous distance constraints.

1 reference

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7 January 2021

A branch-and-bound method for optimal atom-type assignment in de novo ligand design.

1 reference

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7 January 2021

A graph-theoretic algorithm for comparative modeling of protein structure

1 reference

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7 January 2021

Exploring the conformational space of protein side chains using dead-end elimination and the A* algorithm

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Probing the role of packing specificity in protein design

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Automated design of the surface positions of protein helices

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

Pairwise calculation of protein solvent-accessible surface areas

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

DREIDING: a generic force field for molecular simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980176-2

7 January 2021

10.1016/S0969-2126(99)80176-2

Identifiers

DOI

1 reference

29 July 2017

1 reference

PubMed ID

10508778