A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins (Q33881114)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044587%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

title

A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044587%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044587%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

author name string

Charles F Aquadro

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044587%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

publication date

31 December 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044587%20AND%20SRC:MED&resulttype=core&format=json

Molecular Biology and Evolution

16 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044587%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

volume

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044587%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

issue

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044587%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

page(s)

1152-1161

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044587%20AND%20SRC:MED&resulttype=core&format=json

Locus-specific decoupling of base composition evolution at synonymous sites and introns along the Drosophila melanogaster and Drosophila sechellia lineages

16 January 2020

cites work

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Coevolution of interacting fertilization proteins

5 July 2018

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Strong evidence for lineage and sequence specificity of substitution rates and patterns in Drosophila

5 July 2018

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Evolution of the Drosophila nuclear pore complex results in multiple hybrid incompatibilities

5 July 2018

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Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects

5 July 2018

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Comparing patterns of natural selection across species using selective signatures

5 July 2018

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High-confidence prediction of global interactomes based on genome-wide coevolutionary networks

5 July 2018

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Steady progress and recent breakthroughs in the accuracy of automated genome annotation

5 July 2018

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5 July 2018

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5 July 2018

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Specificity in protein interactions and its relationship with sequence diversity and coevolution

5 July 2018

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Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis

5 July 2018

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Phylogenetic incongruence in the Drosophila melanogaster species group

5 July 2018

1 reference

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Maximum likelihood estimation of ancestral codon usage bias parameters in Drosophila.

5 July 2018

1 reference

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Dynamic nuclear pore complexes: life on the edge.

5 July 2018

1 reference

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Hearing silence: non-neutral evolution at synonymous sites in mammals

5 July 2018

1 reference

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Evolution of reproductive proteins from animals and plants.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Why highly expressed proteins evolve slowly

5 July 2018

1 reference

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ROCR: visualizing classifier performance in R

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Structure, function, and evolution of transient and obligate protein-protein interactions

5 July 2018

1 reference

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HyPhy: hypothesis testing using phylogenies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

ADVICE: Automated Detection and Validation of Interaction by Co-Evolution.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Coevolution of gene expression among interacting proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

DNA variability and divergence at the notch locus in Drosophila melanogaster and D. simulans: a case of accelerated synonymous site divergence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Mutation rate variation in the mammalian genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Adaptive evolution drives divergence of a hybrid inviability gene between two species of Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Modular self-assembly of a Y-shaped multiprotein complex from seven nucleoporins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

A relationship between gene expression and protein interactions on the proteome scale: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Co-evolution of proteins with their interaction partners

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Cluster analysis and display of genome-wide expression patterns

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

5 July 2018

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A codon-based model of nucleotide substitution for protein-coding DNA sequences

5 July 2018

1 reference

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A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

5 July 2018

1 reference

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Evolution of protein-coding genes in Drosophila.

5 July 2018

1 reference

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Patterns of mutation and selection at synonymous sites in Drosophila.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Pervasive adaptive evolution among interactors of the Drosophila hybrid inviability gene, Nup96.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

A single determinant dominates the rate of yeast protein evolution

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Molecular phylogeny of the Drosophila melanogaster species subgroup

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Co-evolutionary analysis reveals insights into protein-protein interactions.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Highly expressed genes in yeast evolve slowly.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877527

Exploiting the co-evolution of interacting proteins to discover interaction specificity

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20044587

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20044587

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/MOLBEV/MSP324

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044587%20AND%20SRC:MED&resulttype=core&format=json

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16 January 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/t4icnz3ombfqtllqoumkcanhae

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044587%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference