TATA-binding protein promotes the selective formation of UV-induced (6-4)-photoproducts and modulates DNA repair in the TATA box (Q33890333)

29 July 2017

title

TATA-binding protein promotes the selective formation of UV-induced (6-4)-photoproducts and modulates DNA repair in the TATA box (English)

1 reference

29 July 2017

Aboussekhra A

1

1 reference

29 July 2017

Thoma F

series ordinal

2

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29 July 2017

language of work or name

English

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publication date

1 January 1999

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29 July 2017

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29 July 2017

volume

18

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29 July 2017

issue

2

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29 July 2017

page(s)

433-443

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Architecture of protein and DNA contacts within the TFIIIB-DNA complex

29 July 2017

cites work

1 reference

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Nucleotide excision repair and photolyase preferentially repair the nontranscribed strand of RNA polymerase III-transcribed genes in Saccharomyces cerevisiae

5 July 2018

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Site-specific repair of cyclobutane pyrimidine dimers in a positioned nucleosome by photolyase and T4 endonuclease V in vitro

5 July 2018

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Cisplatin- and UV-damaged DNA lure the basal transcription factor TFIID/TBP.

5 July 2018

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RNA polymerase II transcription inhibits DNA repair by photolyase in the transcribed strand of active yeast genes

5 July 2018

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Strand-specific modulation of UV photoproducts in 5S rDNA by TFIIIA binding and their effect on TFIIIA complex formation

5 July 2018

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Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene

5 July 2018

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Eukaryotic transcription factor-DNA complexes.

5 July 2018

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Chromatin structure modulates DNA repair by photolyase in vivo

5 July 2018

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DNA damage can alter the stability of nucleosomes: effects are dependent on damage type

5 July 2018

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Excision repair at the level of the nucleotide in the Saccharomyces cerevisiae MFA2 gene: mapping of where enhanced repair in the transcribed strand begins or ends and identification of only a partial rad16 requisite for repairing upstream control s

5 July 2018

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Lack of gene- and strand-specific DNA repair in RNA polymerase III-transcribed human tRNA genes

5 July 2018

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Inhibition of transcription factor binding by ultraviolet-induced pyrimidine dimers

5 July 2018

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The general transcription factors of RNA polymerase II

5 July 2018

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UV damage and repair mechanisms in mammalian cells

5 July 2018

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Biochemistry and structural biology of transcription factor IID (TFIID)

5 July 2018

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5 July 2018

DNA repair in eukaryotes

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5 July 2018

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Relationships between DNA repair and transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Taq DNA polymerase blockage at pyrimidine dimers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Crystal structure of a yeast TFIIA/TBP/DNA complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

No "End of History" for photolyases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

DNA repair domains within a human gene: selective repair of sequences near the transcription initiation site

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Yeast DNA-repair gene RAD14 encodes a zinc metalloprotein with affinity for ultraviolet-damaged DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Instability and decay of the primary structure of DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

TFIIIC relieves repression of U6 snRNA transcription by chromatin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Co-crystal structure of TBP recognizing the minor groove of a TATA element

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Crystal structure of a yeast TBP/TATA-box complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Lack of transcription-coupled repair in mammalian ribosomal RNA genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Distribution and repair of photolesions in DNA: genetic consequences and the role of sequence context

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

TBP, a universal eukaryotic transcription factor?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Repair by human cell extracts of single (6-4) and cyclobutane thymine-thymine photoproducts in DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

DNA repair rates mapped along the human PGK1 gene at nucleotide resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Mechanisms of transcription-repair coupling and mutation frequency decline

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

TFIIIB placement on a yeast U6 RNA gene in vivo is directed primarily by TFIIIC rather than by sequence-specific DNA contacts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

A new class of DNA photolyases present in various organisms including aplacental mammals.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

A eukaryotic gene encoding an endonuclease that specifically repairs DNA damaged by ultraviolet light

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Crystal structure of a TFIIB-TBP-TATA-element ternary complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Comparing transcriptional initiation by RNA polymerases I and III.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Repair of UV damage in actively transcribed ribosomal genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Distribution of UV light-induced damage in a defined sequence of human DNA: detection of alkaline-sensitive lesions at pyrimidine nucleoside-cytidine sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

In vivo DNA-binding properties of a yeast transcription activator protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

In vivo "photofootprint" changes at sequences between the yeast GAL1 upstream activating sequence and "TATA" element require activated GAL4 protein but not a functional TATA element

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

"Ultraviolet footprinting" accurately maps sequence-specific contacts and DNA kinking in the EcoRI endonuclease-DNA complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Genomic footprinting in mammalian cells with ultraviolet light

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Origin of ultraviolet damage in DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Thymine dimer formation as a probe of the path of DNA in and between nucleosomes in intact chromatin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Transcription of a yeast U6 snRNA gene requires a polymerase III promoter element in a novel position

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Site-specific effect of thymine dimer formation on dAn.dTn tract bending and its biological implications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Unusual conformation of (dA)n.(dT)n-tracts as revealed by cyclobutane thymine-thymine dimer formation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Effects of DNA looping on pyrimidine dimer formation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Binding of transcription factors creates hot spots for UV photoproducts in vivo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

The role of the TATA-binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor, TFIIIB.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

UV damage to DNA strongly influences its rotational setting on the histone surface of reconstituted nucleosomes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Reciprocal interferences between nucleosomal organization and transcriptional activity of the yeast SNR6 gene.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

UV Light as a Footprinting Agent: Modulation of UV-induced DNA Damage by Transcription Factors Bound at the Promoters of Three Human Genes

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

UV induced (6-4) photoproducts are distributed differently than cyclobutane dimers in nucleosomes

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1171137

Protection against UV-induced pyrimidine dimerization in DNA by triplex formation

29 October 2018

1 reference

12 December 2020

Photofootprinting in vivo detects transcription-dependent changes in yeast TATA boxes

1 reference

12 December 2020

Determination of pyrimidine dimer unwinding angle by measurement of DNA electrophoretic mobility

1 reference

12 December 2020

Use of light for footprinting DNA in vivo

1 reference

12 December 2020

UV-induced mutation hotspots occur at DNA damage hotspots

1 reference

12 December 2020

Repair of UV-induced (6-4) photoproducts in nucleosome core DNA

1 reference

12 December 2020

Repair of 6-4 photoproducts in Saccharomyces cerevisiae

1 reference

12 December 2020

The solution structure of DNA duplex-decamer containing the (6-4) photoproduct of thymidylyl(3'-->5')thymidine by NMR and relaxation matrix refinement

1 reference

12 December 2020

Metabolic processing of cyclobutyl pyrimidine dimers and (6-4) photoproducts in UV-treated human cells. Evidence for distinct excision-repair pathways

1 reference

12 December 2020

Unfolding of nucleosome cores dramatically changes the distribution of ultraviolet photoproducts in DNA

1 reference

12 December 2020

An ATP-dependent inhibitor of TBP binding to DNA

1 reference

12 December 2020

Crystal structure of the yeast TFIIA/TBP/DNA complex

1 reference

12 December 2020

Modulation of cyclobutane pyrimidine dimer formation in a positioned nucleosome containing poly(dA.dT) tracts

1 reference

12 December 2020

Identifiers

DOI

10.1093/EMBOJ/18.2.433

1 reference

release_plnq7ltcybbiri2ao3ozcynq74

29 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/plnq7ltcybbiri2ao3ozcynq74

24 November 2022

mapped directly with Wikidata item

PMC publication ID

1171137

1 reference

29 July 2017

1 reference