Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources. (Q33898550)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

meta-analysis

0 references

title

Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Elizabeth J Glass

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Mari A Smits

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Paolo Moroni

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Bianca Castiglioni

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Paola Cremonesi

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Gilles Foucras

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Elisabetta Giuffra

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

7

Christophe Klopp

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

25

Rachel Rupp

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

author name string

Sem Genini

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Bouabid Badaoui

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Gert Sclep

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Stephen C Bishop

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Dave Waddington

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Marie-Hélène Pinard van der Laan

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Cédric Cabau

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Hans-Martin Seyfert

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Wolfram Petzl

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Astrid de Greeff

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Hilde E Smith

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Ingrid Olsaker

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Guro M Boman

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Giuliano Pisoni

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Marcello Del Corvo

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Eliane Foulon

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

language of work or name

English

0 references

publication date

11 May 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

volume

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

page(s)

225

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 2.0 Generic

31 January 2020

copyright license

start time

11 May 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/3118214

inferred from PubMed Central ID database lookup

cites work

Proteomics, genomics, and pathway analyses of Escherichia coli and Staphylococcus aureus infected milk whey reveal molecular pathways and networks involved in mastitis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

XBP-1 couples endoplasmic reticulum stress to augmented IFN-beta induction via a cis-acting enhancer in macrophages.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Hypoxia-inducible factors as essential regulators of inflammation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Regulation of immune cell development through soluble inositol-1,3,4,5-tetrakisphosphate

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Escherichia coli infection induces distinct local and systemic transcriptome responses in the mammary gland

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Multitasking with ubiquitin through multivalent interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling as potential mechanism for the negative relationships between immune [...]

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Pleiotropic effects of negative energy balance in the postpartum dairy cow on splenic gene expression: repercussions for innate and adaptive immunity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Meta Analysis of Gene Expression Data within and Across Species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

The genome sequence of taurine cattle: a window to ruminant biology and evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Profile of the bovine acute-phase response following an intravenous bolus-dose lipopolysaccharide challenge

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Meta-analysis of age-related gene expression profiles identifies common signatures of aging.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Meta-analysis of gene expression profiles related to relapse-free survival in 1,079 breast cancer patients.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Meta-analysis of microarray studies reveals a novel hematopoietic progenitor cell signature and demonstrates feasibility of inter-platform data integration

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

A meta-analysis of microarray gene expression in mouse stem cells: redefining stemness.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Identification of a common gene expression response in different lung inflammatory diseases in rodents and macaques.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Finding common genes in multiple cancer types through meta-analysis of microarray experiments: a rank aggregation approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Acute phase response in two consecutive experimentally induced E. coli intramammary infections in dairy cows

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Identification of immune genes and proteins involved in the response of bovine mammary tissue to Staphylococcus aureus infection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Physiology, pathology and relatedness of human tissues from gene expression meta-analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Escherichia coli, but not Staphylococcus aureus triggers an early increased expression of factors contributing to the innate immune defense in the udder of the cow.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Analysis of the real EADGENE data set: comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (open access publication)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

The EADGENE Microarray Data Analysis Workshop (open access publication).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Bacterial interference of ubiquitination and deubiquitination

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

A data integration methodology for systems biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

A data integration methodology for systems biology: experimental verification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Liver X receptor and retinoic X receptor agonists modulate the expression of genes involved in lipid metabolism in human endothelial cells.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

The mammalian unfolded protein response

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Endoplasmic reticulum stress modulates the response of myelinating oligodendrocytes to the immune cytokine interferon-gamma

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Insights into host responses against pathogens from transcriptional profiling.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

CD1 assembly and the formation of CD1-antigen complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Expression of a beta-defensin mRNA, lingual antimicrobial peptide, in bovine mammary epithelial tissue is induced by mastitis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Severity of E. coli mastitis is mainly determined by cow factors.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Comparison and meta-analysis of microarray data: from the bench to the computer desk.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

A novel design of whole-genome microarray probes for Saccharomyces cerevisiae which minimizes cross-hybridization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Development and testing of a high-density cDNA microarray resource for cattle

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

The X-box binding protein-1 transcription factor is required for plasma cell differentiation and the unfolded protein response

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Diagnosis of multiple cancer types by shrunken centroids of gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Human macrophage activation programs induced by bacterial pathogens

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Oncostatin M: signal transduction and biological activity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Cytokines and the hepatic acute-phase response

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

The ubiquitin-proteasome pathway: on protein death and cell life

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

An assessment of opportunities to dissect host genetic variation in resistance to infectious diseases in livestock.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-225

Combining multiple microarray studies and modeling interstudy variation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-225

Moderated effect size and P-value combinations for microarray meta-analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-225

Coordinate regulation of phospholipid biosynthesis and secretory pathway gene expression in XBP-1(S)-induced endoplasmic reticulum biogenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-225

maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-225

Bovine TLR2 and TLR4 properly transduce signals from Staphylococcus aureus and E. coli, but S. aureus fails to both activate NF-kappaB in mammary epithelial cells and to quickly induce TNFalpha and interleukin-8 (CXCL8) expression in the udder.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-225

Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118214

Microarray analysis of gene expression of milk leukocytes in healthy goats

29 October 2018

1 reference

12 December 2020

The power of statistical tests for moderators in meta-analysis

1 reference

12 December 2020

The power of statistical tests in meta-analysis

1 reference

12 December 2020

Lipid presentation by CD1: the short and the long lipid story

1 reference

12 December 2020

Differentially expressed genes associated with Staphylococcus aureus mastitis in dairy goats

1 reference

12 December 2020

High-resolution in situ hybridization histochemistry

1 reference

12 December 2020

Integrative analysis of multiple gene expression profiles applied to liver cancer study

1 reference

12 December 2020

The plasticity of dendritic cell responses to pathogens and their components

1 reference

12 December 2020

Predisposition of cows to mastitis in non-infected mammary glands: effects of dietary-induced negative energy balance during mid-lactation on immune-related genes

1 reference

12 December 2020

Spermine differentially regulates the production of interleukin-12 p40 and interleukin-10 and suppresses the release of the T helper 1 cytokine interferon-gamma

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-12-225

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

31 January 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-225

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21569310%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

PubMed publication ID

21569310

1 reference