Phi values in protein-folding kinetics have energetic and structural components. (Q33900598)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16009941%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

title

Phi values in protein-folding kinetics have energetic and structural components (English)

1 reference

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30 December 2019

0 references

3

1 reference

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30 December 2019

2

Ken A Dill

1 reference

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30 December 2019

author name string

Claudia Merlo

series ordinal

1

1 reference

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30 December 2019

language of work or name

English

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publication date

11 July 2005

1 reference

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30 December 2019

number of pages

5

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Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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30 December 2019

volume

102

1 reference

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30 December 2019

issue

29

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30 December 2019

page(s)

10171-10175

1 reference

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The folding transition state of the cold shock protein is strongly polarized

30 December 2019

cites work

1 reference

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Transition states for protein folding have native topologies despite high structural variability

5 July 2018

1 reference

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Cooperativity in two-state protein folding kinetics.

5 July 2018

1 reference

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Origin of unusual phi-values in protein folding: evidence against specific nucleation sites

5 July 2018

1 reference

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Calculation of mutational free energy changes in transition states for protein folding

5 July 2018

1 reference

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The origins of asymmetry in the folding transition states of protein L and protein G.

5 July 2018

1 reference

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Hydrophobic core packing in the SH3 domain folding transition state

5 July 2018

1 reference

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Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations

5 July 2018

1 reference

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Mapping the folding pathway of an immunoglobulin domain: structural detail from Phi value analysis and movement of the transition state

5 July 2018

1 reference

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Protein folding from a highly disordered denatured state: the folding pathway of chymotrypsin inhibitor 2 at atomic resolution

5 July 2018

1 reference

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Three key residues form a critical contact network in a protein folding transition state

5 July 2018

1 reference

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From snapshot to movie: phi analysis of protein folding transition states taken one step further

5 July 2018

1 reference

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Experiment and theory highlight role of native state topology in SH3 folding

5 July 2018

1 reference

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The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177393

Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.

5 July 2018

1 reference

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A simple model for calculating the kinetics of protein folding from three-dimensional structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177393

Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures

5 July 2018

1 reference

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A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177393

Synergy between simulation and experiment in describing the energy landscape of protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177393

"New view" of protein folding reconciled with the old through multiple unfolding simulations.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177393

Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177393

Pathways of protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177393

Characterization of the transition state of protein unfolding by use of molecular dynamics: chymotrypsin inhibitor 2

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177393

Structure of the transition state for the folding/unfolding of the barley chymotrypsin inhibitor 2 and its implications for mechanisms of protein folding.

5 July 2018

1 reference

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Elucidating the folding problem of helical peptides using empirical parameters. III. Temperature and pH dependence.

5 July 2018

1 reference

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Elucidating the folding problem of helical peptides using empirical parameters. II. Helix macrodipole effects and rational modification of the helical content of natural peptides.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177393

Mapping the transition state and pathway of protein folding by protein engineering

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177393

Critical role of beta-hairpin formation in protein G folding.

5 July 2018

1 reference

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Conformational plasticity in folding of the split beta-alpha-beta protein S6: evidence for burst-phase disruption of the native state

21 January 2018

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Structure of the transition state for folding of a protein derived from experiment and simulation

21 January 2018

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Simple physical models connect theory and experiment in protein folding kinetics

21 January 2018

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Importance of sequence specificity for predicting protein folding pathways: Perturbed Gaussian chain model

21 January 2018

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Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

21 January 2018

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Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: how adequate is native-centric topological modeling?

21 January 2018

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Elucidating the folding problem of alpha-helices: local motifs, long-range electrostatics, ionic-strength dependence and prediction of NMR parameters.

21 January 2018

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Transition states and the meaning of Phi-values in protein folding kinetics

21 January 2018

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Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach

21 January 2018

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A breakdown of symmetry in the folding transition state of protein L

21 January 2018

1 reference

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The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

21 January 2018

1 reference

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Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain

21 January 2018

1 reference

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The formation of a native-like structure containing eight conserved hydrophobic residues is rate limiting in two-state protein folding of ACBP

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177393

29 October 2018

Finding the right fold

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16009941

12 December 2020

inferred from PubMed ID database lookup

The folding mechanism of a beta-sheet: the WW domain

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16009941

12 December 2020

inferred from PubMed ID database lookup

The folding of an immunoglobulin-like Greek key protein is defined by a common-core nucleus and regions constrained by topology

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16009941

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.0504171102

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16009941%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

0 references

1 reference

1 reference

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30 December 2019

PubMed publication ID

16009941

1 reference