Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET. (Q33906533)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16024731%20AND%20SRC:MED&resulttype=core&format=json

31 December 2019

title

Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET (English)

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31 December 2019

1

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5

David J Nesbitt

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31 December 2019

author name string

Christopher D Downey

series ordinal

2

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31 December 2019

Julie L Fiore

series ordinal

3

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31 December 2019

Arthur Pardi

series ordinal

4

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31 December 2019

language of work or name

English

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publication date

15 July 2005

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Proceedings of the National Academy of Sciences of the United States of America

31 December 2019

published in

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31 December 2019

volume

102

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31 December 2019

issue

30

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31 December 2019

page(s)

10505-10510

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Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme

31 December 2019

cites work

1 reference

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Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity

5 July 2018

1 reference

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A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate

5 July 2018

1 reference

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Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

5 July 2018

1 reference

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Single-molecule transition-state analysis of RNA folding

5 July 2018

1 reference

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Correlating structural dynamics and function in single ribozyme molecules

5 July 2018

1 reference

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Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules.

5 July 2018

1 reference

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Partially condensed DNA conformations observed by single molecule fluorescence microscopy

5 July 2018

1 reference

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The kink-turn: a new RNA secondary structure motif

5 July 2018

1 reference

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Quantitative analysis of the isolated GAAA tetraloop/receptor interaction in solution: a site-directed spin labeling study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

Ratiometric single-molecule studies of freely diffusing biomolecules.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

The folding of the hairpin ribozyme: dependence on the loops and the junction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

Ligand-induced conformational changes observed in single RNA molecules

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

Solution structure of a GAAA tetraloop receptor RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

An RNA internal loop acts as a hinge to facilitate ribozyme folding and catalysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

Crystal structure of a group I ribozyme domain: principles of RNA packing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

Three-dimensional structure of a hammerhead ribozyme

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

Antisense RNA control in bacteria, phages, and plasmids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

Frequent use of the same tertiary motif by self-folding RNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

An important RNA tertiary interaction of group I and group II introns is implicated in gram-positive RNase P RNAs.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

A Single-Molecule Study of RNA Catalysis and Folding

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408645102

Control of memory formation through regulated expression of a CaMKII transgene

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408645102

Exploration of the transition state for tertiary structure formation between an RNA helix and a large structured RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408645102

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408645102

The linkage between magnesium binding and RNA folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408645102

The GAAA tetraloop-receptor interaction contributes differentially to folding thermodynamics and kinetics for the P4-P6 RNA domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408645102

GNRA tetraloops make a U-turn

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180751

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

29 October 2018

1 reference

12 December 2020

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

1 reference

12 December 2020

Mechanochemical coupling in actomyosin energy transduction studied by in vitro movement assay

1 reference

12 December 2020

Tecto-RNA: One-Dimensional Self-Assembly through Tertiary Interactions This work was carried out in Strasbourg with the support of grants to N.B.L. from the NIH (1R15 GM55898) and the NIH Fogarty Institute (1-F06-TW02251-01) and the support of the C

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0408645102

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16024731%20AND%20SRC:MED&resulttype=core&format=json

31 December 2019

0 references

1 reference

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31 December 2019

PubMed publication ID

16024731

1 reference